Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3341 ATGGAAGTAAAAGGAAGCAGCAACAGCAACAAGAGCGCCGTCTTAATAAGCCAGAGCGAGGAGGAAGAGATGATGGATCTCCGAAGAGGGCCATGGACGGTGGATGAAGACCTCACACTCATCAATTACATTGCCACTCATGGCGAAGGTCGCTGGAATTCCCTTGCTCGGTCTGCTGGACTCAAACGAACTGGGAAGAGTTGTAGATTGAGGTGGCTCAACTATCTTCGTCCTGATGTTCGTCGTGGTAACATCACACTTGAGGAACAACTTCTCATCCTTGAACTCCATACTCGTTGGGGAAACAGGTGGTCTAAAATTGCACAATATTTGCCTGGAAGAACTGACAACGAGATCAAGAATTATTGGAGAACTCGTGTTCAAAAACATGCCAAACAACTCAAATGTGACGTGAATAGCAAGCAATTTAAAGACGCCATGCGCTACCTTTGGATGCCACGGCTGGTTGAACGCATTCAAGCAGCCGCGGCCGCCTCCACCACCACAACTACAGTCGTAGCGCCGACCAACACCAGCATTAATAATAATAATAATGCATTCACTTACAACAACAACCTCAATAACAATTTTGAGGTTCACAATGGGAAAATGATGCTACCTACTAGTACTCCTCCTTCGGTTATGGCCAATAATGATTTTGTGGGTTCACAAATTACCACACAAAGTTACAACACTCCAGAGAATAGTAGCACAGCAGCGTCATCAGACTCGTTTGGGACTCCAATCTCGGATTTTAATGATTATTATAATAGTAACAACATTAATAATCTAGGAGATAATAATTTCTACCAAGCTTCTCAAACATTGTTCTCTCATGAACAAGGAATGGATCTTCAAAGCATGATGATGGTGGAGTCAAACACACCTTGGATGCAAAGTGGGGATACATCGGACAATTTTTGGAATGTTGAGAACATGTTGTTTTTGGAGCAACAACTCATGAATGACAACATGTGA 978 0.4315 MEVKGSSNSNKSAVLISQSEEEEMMDLRRGPWTVDEDLTLINYIATHGEGRWNSLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHTRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDAMRYLWMPRLVERIQAAAAASTTTTTVVAPTNTSINNNNNAFTYNNNLNNNFEVHNGKMMLPTSTPPSVMANNDFVGSQITTQSYNTPENSSTAASSDSFGTPISDFNDYYNSNNINNLGDNNFYQASQTLFSHEQGMDLQSMMMVESNTPWMQSGDTSDNFWNVENMLFLEQQLMNDNM* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3341 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 81 131 IPR017930 -
Amo01g3341 325 Pfam Myb-like DNA-binding domain 29 76 IPR001005 -
Amo01g3341 325 Pfam Myb-like DNA-binding domain 82 125 IPR001005 -
Amo01g3341 325 Gene3D - 26 82 - -
Amo01g3341 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 24 80 IPR017930 -
Amo01g3341 325 CDD SANT 31 76 IPR001005 -
Amo01g3341 325 PANTHER MYB TRANSCRIPTION FACTOR 1 320 - -
Amo01g3341 325 Gene3D - 86 149 - -
Amo01g3341 325 CDD SANT 102 125 IPR001005 -
Amo01g3341 325 SUPERFAMILY Homeodomain-like 26 123 IPR009057 -
Amo01g3341 325 ProSiteProfiles Myb-like domain profile. 77 127 IPR001005 -
Amo01g3341 325 SMART sant 81 129 IPR001005 -
Amo01g3341 325 SMART sant 28 78 IPR001005 -
Amo01g3341 325 ProSiteProfiles Myb-like domain profile. 24 76 IPR001005 -
Amo01g3341 325 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 1 320 IPR044676 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3341 Amo-Chr1 105811648 105814108 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3341 22 310 MYB Transcription Factor Family AT3G06490 54.167 1.61e-89 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo01g3341 Myb_DNA-binding 4.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3341 K09422 - gmx:778183 396.356