LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo01g3335	ATGTTGGGGTCAAAGAAGATTTTCATTCTGGCTATAGATATGAATATTCTTCTGTGTTTCATTCTTTCATTAACTACTACTATTACTACATCTTTCATTAAAGAAGCAGCATCATCATCATCAGAATTTAATGTGAAAAGCTATGAAGCTGATAGAGTAAGAGATCTTCCTGGCCAACCTTCAAGCCCATTGGTCTCACACTTTTCAGGATATATCACTGTCAATCAAGAACATGGGAGGGCCCTTTTTTACTGGTTCTTTGAAGCTCAATCTGATCCTTCCAACAAGCCTCTCCTTCTATGGCTCAATGGAGGACCTGGATGCTCCTCAATTGGGTATGGTGCTGTAGTTGAGATAGGACCTCTTTTGGTCAACAAAAATGGTGAAGGACTACAATTCAACCCATATTCATGGAATCAAGAAGCAAATTTATTATTTGTGGAGTCCCCTGTTGGAGTTGGTTTCTCTTACACCAACACATCCTCTGACCTCACTATACTAGAGGATAGCTTTGTTGCTGAGGATGCCTACAATTTCTTGGTAAATTGGCTACAAAGATTCCCTCAGTTCAAATCAAGGGACTTCTTTATATCAGGAGAAAGCTATGCTGGCCATTATGTCCCTCAACTTGCAGAGCTAGTATTTGATCGAAATAAGGATAGAAACAAGTACCCTTTTATTAATCTTAAAGGTTTTATTGTGGGGAATCCAGAAACTGATGATTACTATGACAACAAAGGCCTTCTAGAATATGCATGGAGCCATGCAGTTATATCAGATGAACAATATGAGAAAGCAAAGAAAGTATGTGATTTTAAACAAATTGATTGGTCTAAGGAATGCAATGAGGCCATGAACACAGTGTGGCAAGATTACTCAGAAATTGACATATACAACATTTATGCCCCTAAATGTACTCTAAATAGCAGCACTTCCTCATTATTATTAGATGATGATGATGAAATTGAGACCAAGAGAATGAGAATTTTTGGTGGCTATGATCCTTGTTATTCCACATATGCAGAACAATATTTCAATAAGATAGATGTTCAATCATCTTTTCATGCTAATATTAGAGGAGAAAACACGAACACTTCTAGTGTAACATGGAAGGTTTGCAATGCTTCCATATTGAGGACTTACAACTTCTCTGTATTTTCGATCCTACCCATCTACACCAAACTCATCCAGGGTGGGCTTAAGATATGGGTTTACAGTGGAGATGCAGATGGAAGAGTACCTGTGATAGGTACACGGTACTGCATTGAGGCCCTTAATTTACCTCTCAAGACTGCTTGGCGTACTTGGTACCATCAAAATCAGGTGGGAGGAAGAATAGTGGAGTATGAAGGGGTGACATATGTGACAGTGAGAGGGGCAGGTCACTTGGTGCCTCTAAACAAACCCAATGAAGCTCTCTCCCTCATTCATTCCTTTCTAACAGGGGACCATCTTCCTACTCGCTAA	1467	0.3933	MLGSKKIFILAIDMNILLCFILSLTTTITTSFIKEAASSSSEFNVKSYEADRVRDLPGQPSSPLVSHFSGYITVNQEHGRALFYWFFEAQSDPSNKPLLLWLNGGPGCSSIGYGAVVEIGPLLVNKNGEGLQFNPYSWNQEANLLFVESPVGVGFSYTNTSSDLTILEDSFVAEDAYNFLVNWLQRFPQFKSRDFFISGESYAGHYVPQLAELVFDRNKDRNKYPFINLKGFIVGNPETDDYYDNKGLLEYAWSHAVISDEQYEKAKKVCDFKQIDWSKECNEAMNTVWQDYSEIDIYNIYAPKCTLNSSTSSLLLDDDDEIETKRMRIFGGYDPCYSTYAEQYFNKIDVQSSFHANIRGENTNTSSVTWKVCNASILRTYNFSVFSILPIYTKLIQGGLKIWVYSGDADGRVPVIGTRYCIEALNLPLKTAWRTWYHQNQVGGRIVEYEGVTYVTVRGAGHLVPLNKPNEALSLIHSFLTGDHLPTR*	489

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo01g3335	488	ProSitePatterns	Serine carboxypeptidases, histidine active site.	452	469	IPR033124	GO:0004185
	Amo01g3335	488	PRINTS	Carboxypeptidase C serine protease (S10) family signature	147	157	IPR001563	GO:0004185\|GO:0006508
	Amo01g3335	488	PRINTS	Carboxypeptidase C serine protease (S10) family signature	452	465	IPR001563	GO:0004185\|GO:0006508
	Amo01g3335	488	PRINTS	Carboxypeptidase C serine protease (S10) family signature	183	208	IPR001563	GO:0004185\|GO:0006508
	Amo01g3335	488	PRINTS	Carboxypeptidase C serine protease (S10) family signature	134	146	IPR001563	GO:0004185\|GO:0006508
	Amo01g3335	488	Gene3D	alpha/beta hydrolase	47	307	IPR029058	-
	Amo01g3335	488	SUPERFAMILY	alpha/beta-Hydrolases	53	483	IPR029058	-
	Amo01g3335	488	ProSitePatterns	Serine carboxypeptidases, serine active site.	197	204	IPR018202	GO:0004185
	Amo01g3335	488	Gene3D	-	388	482	-	-
	Amo01g3335	488	PANTHER	SERINE CARBOXYPEPTIDASE-LIKE 26	39	487	-	-
	Amo01g3335	488	Pfam	Serine carboxypeptidase	57	481	IPR001563	GO:0004185\|GO:0006508
	Amo01g3335	488	Gene3D	-	336	377	-	-
	Amo01g3335	488	PANTHER	SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE	39	487	IPR001563	GO:0004185\|GO:0006508

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo01g3335	Amo-Chr1	105728299	105734593	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo01g3335	370	485	Calmodulin-binding Proteins	AT2G22960	32.479	8.89e-14	68.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo01g3335	K16297		-	gmx:100815141	772.311