Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3295 ATGGAAGTTATGTCTTTTTGTGTCACATTCATCAAATTTCATACATTTGCCTTTCTGAAACCAAAAGTAGCAACAACCCAAATTCAGGGCCTTTCACTACCCAATAATAGGAGCAAACATTGCAATCTTTATTCATCTTCTTCTTCATCTTCAAGAAGTATAGCAGCAACAGCAACACTATACCCTTCCACCACACAGAAGAACCGCCACTGGATGGTACTCATGGAGCCTCCACCTCACGGTGTCACTTCCAAGTCACAACTCATCGATTATTACGCCAGCACTCTCCACAAAGTCCTTGCTAGTGAGAGAGATGCTCAAATGTGTATATATGATGCTTCCTACGATACACACTTTGGTTTCTGTTGTGACATTGATCCACAAATAACCTCCCAACTCACAAGTTTACCGGGGGTCTTGTTAGTTAGGCCTGATCCGGATTTCAGTTCTTCGGAAAAGGACTATAGTCTATCAAGTGGTCAAGAAGGTCTGCTATCGAATTCAAAACTACAATTTGAAACCAACATGTTATTCTTTCTTGAGAATTCAAAGCATTGGCTTGTTAGAATTGATAAACCTGCTGTTGGGATTGTTACAAAGGCTCAGATGGTCGATTATTTTGTTCAAATATTGACCAAGGTCATGGGAAACGAGAAGGATGCTCAGATGTGCATATATCATGTTTCTTGGAAAAAAATATTTGGTTTTTGCTGTGAACTTGATGACGACTGTGCACAGGAGTTAGCTGGTGTGCCTGGTATCTTATCAGTTCAACCAGATAATAATTTTGAGTCAGAAAATAAGGATTATGAAGGTAATAACTTGGAAAACAGTTTGAGTGTGCAAAAATCTTTTGAAGCAAGTCAGGCAGCTCCCCTGCGAACGAAAAAGCTTTTTGTGACAGGACTATCGTTTTATACATCTGAGAAAACCTTACGCGCAGCATTTGAAGGCTTTGGTGATCTTGTTGAAGTCAAAATCATTATGGATAAAATTTCCAAAAGGTCCAAGGGTTATGCATTTGTTGAGTACACCACAGAGGAGGCTGCAAGCGCAGCATTGAAAGAGATGAATGGCAAGATTATTAATGGATGGATGATAGTAGTGGATGTTGCCAAGACTAACCCACCAAGGCACAACAGGGTCATGTCAGGCCATCAGTTTCACAAGCCAAAAGCCTTTTAA 1185 0.4025 MEVMSFCVTFIKFHTFAFLKPKVATTQIQGLSLPNNRSKHCNLYSSSSSSSRSIAATATLYPSTTQKNRHWMVLMEPPPHGVTSKSQLIDYYASTLHKVLASERDAQMCIYDASYDTHFGFCCDIDPQITSQLTSLPGVLLVRPDPDFSSSEKDYSLSSGQEGLLSNSKLQFETNMLFFLENSKHWLVRIDKPAVGIVTKAQMVDYFVQILTKVMGNEKDAQMCIYHVSWKKIFGFCCELDDDCAQELAGVPGILSVQPDNNFESENKDYEGNNLENSLSVQKSFEASQAAPLRTKKLFVTGLSFYTSEKTLRAAFEGFGDLVEVKIIMDKISKRSKGYAFVEYTTEEAASAALKEMNGKIINGWMIVVDVAKTNPPRHNRVMSGHQFHKPKAF* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3295 394 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 298 364 IPR000504 GO:0003723
Amo01g3295 394 SUPERFAMILY RNA-binding domain, RBD 289 382 IPR035979 GO:0003676
Amo01g3295 394 SMART rrm1_1 297 370 IPR000504 GO:0003723
Amo01g3295 394 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 38 149 IPR037045 -
Amo01g3295 394 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 180 263 IPR037045 -
Amo01g3295 394 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 296 374 IPR000504 GO:0003723
Amo01g3295 394 Gene3D - 264 392 IPR012677 -
Amo01g3295 394 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 42 384 IPR039206 GO:0016554
Amo01g3295 394 PANTHER ORGANELLE RRM DOMAIN-CONTAINING PROTEIN 1, CHLOROPLASTIC 42 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3295 Amo-Chr1 105255282 105256531 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3295 296 378 C2H2 Transcription Factor Family AT2G19380 33.735 1.96e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3295 - - vun:114191397 526.554