Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3294 ATGGGAACGCCACCAACGGAAGAGCTTATGAAGAAGATCGAGCAGCTAGAGGAAGGTCACGAGCATCTCAAGCAAGAGATGTCAAGGCTCAAGCTTTCTGATGCCACCAGAAGCCACCACCACCACCATCGCCAGAGGTCTCACTCCGTCTCTCCGCAGCGTTCTAGATTGGGTGCACCGCCGAAGAGGGGACCCGCCGATGGAGCCTCAGCTGCCGCATGGAAGAGAGGCTCTTGTTCCTTTAAGCAATCTTCACCTCTGCAGAGAGAGAGTCGCAGTGATCCCAAAAAAGAAGGTGAAGGAGGTGGTGGTGCAAAGTGTGGTCCTTCCGCCGTGAATTTTACTGATAGACAGTATCTTAATATTTTGCAGTCAATGGGACAGTCCGTTCATATATTGGATCTTACCTCTCGGATAATCTACTGGAACCSYAGTGCCGAAAATCTGTATGGTTATGCTGCGGAGGAAGCTCTTGGGCAGGATGGGATTGAGCTGATTGTTGACCCCAGGGATTTTGCCTTGGCTGAWGATATTGTGAACCGTGTCGTAATGGGAGAGAGCTGGACTGGGCAATTCCCGGTCAAGAARAAGATGGGAGAGCAGTTCTTGGRGGTGGCGACGAATACTCCTTTCTATGATGATGATGGAAGTTTAGTTGGGATTATCTGTGTCTCGAGTGATTCGCGGCTCTTCGTTGAAACGAGAGTTCCGTGCTTGGGTGCAAACAATGCRGAATCAGGTTCAGGCTCTAGGCCTCTTAGAAGTAGCATTTCAAATAAACTTGGCCTTGATACTCAGCAGCCTCTCCAAACTTCTATAGCATCCAAGTTCTCYAATTTGGCATCAAAGGTAAGTAACAAAGTTAAGTCAAGAATCCGGACRGGAGAAAATAACGGTGATCGTGAAAGCGGGAYCGGAGGAAGTCATCAATCTGAGCATAGTTTCTCAGAAGTTGGTGTTGCAGACCACAGAGAGGATGCTAATTCCAGTGGAGCTAGCACACCCAGAGGTGATGTGATGCAGTCCCCTTTTGGTATATTTTCTCATGGTGAGGAAAGATCCCAAGGAAAAACTTTGAAAGAATKTGCCGATGATAGTGAAGGAAAATCTATTCACAAGATTATAACGTCTAGGGCTGAAGCATGGATTCAAAAGAAAACAATGGCATGGCCATGGAAAGCAAATGATCAAGAAGGATCGGAGGCAAAGGATGTCCGTGTTGCTGTGTCTTTCTTGTCAAATGATCATCAAGAAAATCAGTCAGTTAATCAGAAGCAAGAACGACAAGGAGGTGAAAGGAATCGCCCTAGTAACAATGAGACTTCAGGATCCTGGTCCTCGTCCATCAATATTAACAGCACAAGTAGTGCCAGCAGCTGTGGAAGTGCCGGAAGTTGTGCTGTCAATAATAAAGTGGATGTGGACACTGATTGCTTGGATTATGAAATTTTGTGGGAAGACCTGACTATTGGAGAACAAATTGGACAAGGTTCCTGTGGAACTGTATATCATGCTCTGTGGTATGGATCAGATGTTGCGGTCAAGGTATTCTCAAAGCAAGAATATTCAGATGATGTGATACTTTCCTTCAGACAAGAGGTTTCTGTTATTAAAAGGCTTCGGCACCCAAATATTCTTCTCTTTATGGGGGCAGTGACTTCACCTCAACGTCTCTGCATCGTGACAGAGTTTCTCCCACGTGGAAGCTTGTGTCGCTTGTTACACAGAAACACGCCGAAACTTGACTGGAGACGACGAGTTCATATGGCCTTGGATATTGCACGAGGTGTGAATTATCTTCATCACTGCAATCCACCTATCATCCATAGAGATTTGAAGTCATCAAATCTTCTAGTTGATAAGAATTGGACTGTAAAGGTTTGTGACTTTGGTCTTTCACGTCTTAAGCATGAAACATTTCTCACGACGAAGACAGGGAGGGGCACACCACAATGGATGGCACCAGAAGTTCTTCGTAACGAACCCTCAGATGAGAAGTCCGATGTATACAGCTTTGGAGTAATATTATGGGAACTTGCAACCGAAAAGATCCCTTGGGATAATCTCAACTCAATGCAGGTGATTGGAGCCGTGGGGTTCATGGATCAGCGACTTGAAATTCCAAAAGATGTTGATCCACGATGGGCTTCTATAATTGAGAGCTGCTGGCATCGTGATCCAGCTTCCCGTCCAACATTCCGGGAACTACTCGAGAAGCTTAGAGAGCTGCAAAGGCAGTATGCCATTCAGCTCCAAGCTGCTCGATCGGCCGGAGGGGAAAGCCCCCAAAAGGAGTCCTAG 2301 0.4624 MGTPPTEELMKKIEQLEEGHEHLKQEMSRLKLSDATRSHHHHHRQRSHSVSPQRSRLGAPPKRGPADGASAAAWKRGSCSFKQSSPLQRESRSDPKKEGEGGGGAKCGPSAVNFTDRQYLNILQSMGQSVHILDLTSRIIYWNXSAENLYGYAAEEALGQDGIELIVDPRDFALAXDIVNRVVMGESWTGQFPVKKKMGEQFLXVATNTPFYDDDGSLVGIICVSSDSRLFVETRVPCLGANNAESGSGSRPLRSSISNKLGLDTQQPLQTSIASKFSNLASKVSNKVKSRIRTGENNGDRESGXGGSHQSEHSFSEVGVADHREDANSSGASTPRGDVMQSPFGIFSHGEERSQGKTLKEXADDSEGKSIHKIITSRAEAWIQKKTMAWPWKANDQEGSEAKDVRVAVSFLSNDHQENQSVNQKQERQGGERNRPSNNETSGSWSSSININSTSSASSCGSAGSCAVNNKVDVDTDCLDYEILWEDLTIGEQIGQGSCGTVYHALWYGSDVAVKVFSKQEYSDDVILSFRQEVSVIKRLRHPNILLFMGAVTSPQRLCIVTEFLPRGSLCRLLHRNTPKLDWRRRVHMALDIARGVNYLHHCNPPIIHRDLKSSNLLVDKNWTVKVCDFGLSRLKHETFLTTKTGRGTPQWMAPEVLRNEPSDEKSDVYSFGVILWELATEKIPWDNLNSMQVIGAVGFMDQRLEIPKDVDPRWASIIESCWHRDPASRPTFRELLEKLRELQRQYAIQLQAARSAGGESPQKES* 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3294 766 MobiDBLite consensus disorder prediction 241 262 - -
Amo01g3294 766 Gene3D Phosphorylase Kinase; domain 1 481 565 - -
Amo01g3294 766 MobiDBLite consensus disorder prediction 412 427 - -
Amo01g3294 766 SUPERFAMILY PYP-like sensor domain (PAS domain) 121 224 IPR035965 -
Amo01g3294 766 MobiDBLite consensus disorder prediction 288 365 - -
Amo01g3294 766 Coils Coil 733 757 - -
Amo01g3294 766 MobiDBLite consensus disorder prediction 1 110 - -
Amo01g3294 766 CDD STKc_MAP3K-like 494 740 - -
Amo01g3294 766 MobiDBLite consensus disorder prediction 301 315 - -
Amo01g3294 766 Pfam PAS fold 118 225 IPR013767 GO:0006355
Amo01g3294 766 PRINTS Tyrosine kinase catalytic domain signature 601 619 IPR001245 GO:0004672|GO:0006468
Amo01g3294 766 PRINTS Tyrosine kinase catalytic domain signature 667 689 IPR001245 GO:0004672|GO:0006468
Amo01g3294 766 PRINTS Tyrosine kinase catalytic domain signature 648 658 IPR001245 GO:0004672|GO:0006468
Amo01g3294 766 PRINTS Tyrosine kinase catalytic domain signature 562 575 IPR001245 GO:0004672|GO:0006468
Amo01g3294 766 PRINTS Tyrosine kinase catalytic domain signature 711 733 IPR001245 GO:0004672|GO:0006468
Amo01g3294 766 MobiDBLite consensus disorder prediction 10 34 - -
Amo01g3294 766 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 30 764 - -
Amo01g3294 766 MobiDBLite consensus disorder prediction 411 450 - -
Amo01g3294 766 CDD PAS 126 227 IPR000014 -
Amo01g3294 766 ProSitePatterns Serine/Threonine protein kinases active-site signature. 607 619 IPR008271 GO:0004672|GO:0006468
Amo01g3294 766 ProSiteProfiles Protein kinase domain profile. 488 748 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g3294 766 MobiDBLite consensus disorder prediction 435 450 - -
Amo01g3294 766 Gene3D PAS domain 127 230 - -
Amo01g3294 766 Pfam Protein tyrosine and serine/threonine kinase 488 740 IPR001245 GO:0004672|GO:0006468
Amo01g3294 766 MobiDBLite consensus disorder prediction 35 50 - -
Amo01g3294 766 TIGRFAM sensory_box: PAS domain S-box protein 117 227 IPR000014 -
Amo01g3294 766 ProSiteProfiles PAS repeat profile. 115 186 IPR000014 -
Amo01g3294 766 SUPERFAMILY Protein kinase-like (PK-like) 477 739 IPR011009 -
Amo01g3294 766 Gene3D Transferase(Phosphotransferase) domain 1 567 753 - -
Amo01g3294 766 SMART serkin_6 488 748 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g3294 766 SMART pas_2 117 184 IPR000014 -
Amo01g3294 766 PANTHER SERINE/THREONINE-PROTEIN KINASE DDB_G0282963 ISOFORM X1-RELATED 30 764 - -
Amo01g3294 766 Coils Coil 6 33 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3294 Amo-Chr1 105248180 105252327 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3294 1 757 MAP Kinase Kinase Kinase AT3G06620 59.923 0.0 935
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Amo01g3294 PK_Tyr_Ser-Thr 2.1e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3294 - - gmx:100800867 1160.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g3294 01 105248180 105252327 Amo04g0054 04 1130004 1137043 PCT
Amo04g0054 04 1130004 1137043 Amo01g3294 01 105248180 105252327 PCT