Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3289 ATGAGGTATCTTGATCTGGATGATAGATCAAGGGAGGCAAAGTCACTAACGCGAACCAAGTGTCCAGCTCGGCTTAGGGTAAAGCTTGACTATGGCTGCGGTAGATGGAAGGTATCATTTTTTGTGGAATCTCACAACCATGATCTGACGCCACCGCAATTTGCGCATCTAGTTCCGGCCAATCGTCGTCTCACTGTCATTGATAAAATCCAAAACACCCTCATTGACTTCATGCATAACCTGGATAGGGCCTTAAAGGAGTATAGAAACAACGAATTAATCGCTGACTTTAAGTCTCAGTGCTCAGAGCCAGTGATGATTACCTCGTTGGAGGTATATGAAAGATCTGCATCATGTTATTTCACTCGAAACATTTTTAAGAAAATTCGTAATGAGATTCAGAGGGTAGGGGTTTTGAATATCAAGGTACTAAGCACAACCTTGGACAAGGTCAAGTTCAGTGTGACTGCTCTCGGAGACCTGGCCAAAGATCGACGGGTGGAAGTCGATAGAGGTAAGAATCTGTTCTCGTGCTCGTGCAAGCTGTTTGAATCACGTGGTATTTCCTATAGTCATGTCTTCTGTGCCATGAAGTTCGAAAACATACTTGAGTTTCCAGATTCGTTGATCTATAAAAGGTGGACAAAGAATGCAAAGAACGAATTTATTAGCACAGAAATGCCTGTGAATGATGACGTCGAAAGGTCACGCAAACAAGGCAACTCAACTCCTAATGTTAACATGGAAGGCATCAACGATCTCTTTGTTGTCAAAAGCAAAGGAGCCCCTTCCAAGAGGTCTTCTTGGAGGAAGAAGAGTGCATGCTCTAATTGCCACAAGTACGGTCATTACTACAAGCGTTGTCCAGATCTGATGCAGCATATTGTGGAAGGTAACTCTCGCGATCGATCAGACGGCAATGCATCAGCCAAGGACTCAAGTTTTAGTCCAGAAAGGTTTGCTAATTCTTCGAGGTCGTTCTCAGTTAAGTCCGAACACCACTTAGGACCTAAGACCAGGCCTTTTAAAAAGGGTGGAACAAGGAAGTTTACGGCGACGAGTATGAGGAACCGAAAGGGTAAAGACAACACTTTTGATGAGCGGAGCCTCCATGAAAGCAGTGAATCCATTGACATCGCGTCCATGAATGGATTTTTCAACAAAAATCTCTATTTGTTAACACAGGTGAAGGAGTCACAGCAGGACAAGGGACATTCATTCACAAACTATGAATGCGTTAATGATGTCATGGATGAGAAATGTGACACACCACATGTGCAGATCGATGTCCGAGATCCGTTACCATCGTCAATGCCTTGTGGCAACAAACAAGGATCGTACATGGCATTGTTCGCGTCGATGCATAGGACACTTTGA 1377 0.4394 MRYLDLDDRSREAKSLTRTKCPARLRVKLDYGCGRWKVSFFVESHNHDLTPPQFAHLVPANRRLTVIDKIQNTLIDFMHNLDRALKEYRNNELIADFKSQCSEPVMITSLEVYERSASCYFTRNIFKKIRNEIQRVGVLNIKVLSTTLDKVKFSVTALGDLAKDRRVEVDRGKNLFSCSCKLFESRGISYSHVFCAMKFENILEFPDSLIYKRWTKNAKNEFISTEMPVNDDVERSRKQGNSTPNVNMEGINDLFVVKSKGAPSKRSSWRKKSACSNCHKYGHYYKRCPDLMQHIVEGNSRDRSDGNASAKDSSFSPERFANSSRSFSVKSEHHLGPKTRPFKKGGTRKFTATSMRNRKGKDNTFDERSLHESSESIDIASMNGFFNKNLYLLTQVKESQQDKGHSFTNYECVNDVMDEKCDTPHVQIDVRDPLPSSMPCGNKQGSYMALFASMHRTL* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3289 458 MobiDBLite consensus disorder prediction 299 348 - -
Amo01g3289 458 Pfam FAR1 DNA-binding domain 9 50 IPR004330 -
Amo01g3289 458 MobiDBLite consensus disorder prediction 309 330 - -
Amo01g3289 458 PANTHER PROTEIN FAR-RED IMPAIRED RESPONSE 1 70 238 - -
Amo01g3289 458 PANTHER PROTEIN FAR-RED IMPAIRED RESPONSE 1 8 54 - -
Amo01g3289 458 ProSiteProfiles Zinc finger CCHC-type profile. 275 290 IPR001878 GO:0003676|GO:0008270
Amo01g3289 458 SUPERFAMILY Retrovirus zinc finger-like domains 261 294 IPR036875 GO:0003676|GO:0008270
Amo01g3289 458 SMART 26again6 176 203 IPR006564 GO:0008270
Amo01g3289 458 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 8 54 IPR031052 GO:0006355
Amo01g3289 458 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 70 238 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3289 Amo-Chr1 105197586 105200246 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo01g3289 FAR1 2.3e-07 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3289 - - ahf:112803750 716.072