Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3287 ATGCTTCAGGCATTCATGAATCTACGCGCTCTCTGTTTGAGGCCATTCGGGCTCGCTGACGACAAGGTCGACACTTCCCCCGTCGAAGTCAACGGCGGCAGCTTCAGAGGCAGCGGAAGCTTCAAAGGCGGCGGCGGCGCAAGAGAAGGCAAGGACAGCCTCCTCTGGTCTCGCGACGTCGGAAAATATGGCTCCGGCGATTTCTCCATGGCCGTCGTCCAGGCCAATCAGGTCCTTGAAGACCAGAGCCAGATAGAGTCCGGTCCCCTTGGCACCTTTGTTGGCATCTACGACGGTCACGGAGGACCCGACGCCGCGCGATTCGTATGCGATCACCTCTTTCGCCATTTTCAAGCAATATCAGCTGAAYCAAATGGAGGCGTGATCACTGAGACCATCGAGAGGGCATTCCGCCAAACAGAAGAAGGGTATGCTGCTCTTGTGTCAGACTTGTGGAGCACTCGGCCTCAAGTCGCAAGCGCCGGGACTTGTTGTCTGGTTGGAGTGATATTTCAGCAGACACTCTTTGTGGCAAACCTTGGAGACTCCCGCGTTGTATTGGGRAAGAAAGTTGGCAACACAGGAGGCGTTGCTGCAATTCAGCTTTCTACAGAACACAATGCAAATGTTGAAGCTGTGCGGCAGGAGCTTAAAGAGTTACACCCACATGATCCCCAGATTGTTGTCCTCAAACATGGAGTGTGGAGAGTCAAAGGCATTATTCAGATTTCTAGATCTATAGGTGACGTATATATGAAAGARGCACAATTTAACCGGGAACCACTTCCTGCAAAATTCAGACTTCCTGAACCCATGCACATGCCTATCTTGAGTGCTGAACCCGCTATTATTTCTCATCGACTGCAACCAAATGATTCTTTCATTATATTTGCATCAGATGGCTTATGGGAGCACCTGAGCAATGAAAAGGCTGTGGAAATTGTTAGCAGCAATCCACACACGGGTAGTGCCAAGAAACTTGTCAAGGCTGCCCTACACGAAGCAGCAAGAAAACGAGAGATGCGATATTCAGACCTGCGCAAGATAGACAAGAAGGTCCGACGCCATTTTCATGATGATATATCTGTTATTGTTTTATTCTTGAACCACGATCTTATATCCAAAGGCACAGTGCTAGACCCACCACTCTCACTTCGAAGCGCACTCGATCACTGA 1176 0.4983 MLQAFMNLRALCLRPFGLADDKVDTSPVEVNGGSFRGSGSFKGGGGAREGKDSLLWSRDVGKYGSGDFSMAVVQANQVLEDQSQIESGPLGTFVGIYDGHGGPDAARFVCDHLFRHFQAISAEXNGGVITETIERAFRQTEEGYAALVSDLWSTRPQVASAGTCCLVGVIFQQTLFVANLGDSRVVLGKKVGNTGGVAAIQLSTEHNANVEAVRQELKELHPHDPQIVVLKHGVWRVKGIIQISRSIGDVYMKEAQFNREPLPAKFRLPEPMHMPILSAEPAIISHRLQPNDSFIIFASDGLWEHLSNEKAVEIVSSNPHTGSAKKLVKAALHEAARKREMRYSDLRKIDKKVRRHFHDDISVIVLFLNHDLISKGTVLDPPLSLRSALDH* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3287 391 Pfam Protein phosphatase 2C 91 338 IPR001932 -
Amo01g3287 391 PANTHER PROTEIN PHOSPHATASE 2C 42-RELATED 4 391 - -
Amo01g3287 391 SMART PP2C_4 54 366 IPR001932 -
Amo01g3287 391 Gene3D - 56 377 IPR036457 -
Amo01g3287 391 ProSitePatterns PPM-type phosphatase domain signature. 93 101 IPR000222 GO:0043169
Amo01g3287 391 ProSiteProfiles PPM-type phosphatase domain profile. 67 368 IPR001932 -
Amo01g3287 391 SUPERFAMILY PP2C-like 77 369 IPR036457 -
Amo01g3287 391 CDD PP2Cc 68 368 IPR001932 -
Amo01g3287 391 PANTHER ALPHABET, ISOFORM E-RELATED 4 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3287 Amo-Chr1 105149527 105153710 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3287 1 388 PP2C-type Phosphatase Gene Family AT4G38520 55.668 4.56e-153 436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3287 K01102 - gmx:100790813 644.039