Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3274 ATGAGCCCCCTTCGTGTTCCTCTACCACCCAACACACCCCACCACTACCTCCAGCTAACGTGCGCCCTCTTCCTTACCCTACGCACCCCCCTTCTTTCCTTTCCATTTCCGTTATTCTCTCTCTCTCTCTCTCACACACACAACATTTGTTTTTATCTTCTCACTTTCATAAACCTCCGCGTTAACCGTTCTCCCCCACCTCCTTTCTCTCGCTCTCTCTCTCATTCCCATCCAGATTCGGAGGTTCGGAACGACACCAAGCTTGCTTCGGGTGCCGCCGGTGGTGGTTTTAGGGTTAGGGTTTCCGAGAGATGTGGTATGCTTCAGGCATTCATGAATCTACGCGCTCTCTGTTTGAGGCCATTCGGGCTCGCTGACGACAAGGTCGACACTTCCCCCGTCGAAGTCAACGGCGGCAGCTTCAGAGGCAGCGGAAGCTTCAAAGGCGGCGGCGGCGCAAGAGAAGGCAAGGACAGCCTCCTCTGGTCTCGCGACGTCGGAAAATATGGCTCCGGCGATTTCTCCATGGCCGTCGTCCAGGCCAATCAGGTCCTTGAAGACCAGAGCCAGATAGAGTCCGGTCCCCTTGGCACCTTTGTTGGCATCTACGACGGTCACGGAGGACCCGACGCCGCGCGATTCGTATGCGATCACCTCTTTCGCCATTTTCAAGCAATATCAGCTGAAACAAATGGAGGCGTGATCACTGAGACCATCGAGAGGGCATTCCGCCAAACAGAAGAAGGGTATGCTGCTCTTGTGTCAGACTTGTGGAGCACTCGGCCTCAAGTCGCAAGCGCCGGGACTTGTTGTCTGGTTGGAGTGATATTTCAGCAGACACTCTTTGTGGCAAACCTTGGAGACTCCCGCGTTGTATTGGGTAAGAAAGTTGGCAACACAGGAGGCGTTGCTGCAATTCAGCTTTCTACAGAACACAATGCAAATGTTGAAGCTGTGCGGCAGGAGCTTAAAGAGTTACACCCACATGATCCCCAGATTGTTGTCCTCAAACATGGAGTGTGGAGAGTCAAAGGCATTATTCAGATTTCTAGATCTATAGGTGACGTATATATGAAAGATGCACAATTTAACCGGGAACCACTTCCTGCAAAATTCAGACTTCCTGAACCCATGCACATGCCTATCTTGAGTGCTGAACCCGCTATTATTTCTCATCGACTGCAACCAAATGATTCTTTCATTATATTTGCATCAGATGGCTTATGGGAGCACCTGAGCAATGAAAAGGCTGTGGAAATTGTTAGCAGCAATCCACACACGGGTAGTGCCAAGAAACTTGTCAAGGCTGCCCTACACGAAGCAGCAAGAAAACGAGAGATGCGATATTCAGACCTGCGCAAGATAGACAAGAAGGTCCGACGCCATTTTCATGATGATATATCTGTTATTGTTTTATTCTTGAACCACGATCTTATATCCAAAGGCACAGTGCTAGACCCACCACTCTCACTTCGAAGCGCACTCGATCACTGA 1494 0.504 MSPLRVPLPPNTPHHYLQLTCALFLTLRTPLLSFPFPLFSLSLSHTHNICFYLLTFINLRVNRSPPPPFSRSLSHSHPDSEVRNDTKLASGAAGGGFRVRVSERCGMLQAFMNLRALCLRPFGLADDKVDTSPVEVNGGSFRGSGSFKGGGGAREGKDSLLWSRDVGKYGSGDFSMAVVQANQVLEDQSQIESGPLGTFVGIYDGHGGPDAARFVCDHLFRHFQAISAETNGGVITETIERAFRQTEEGYAALVSDLWSTRPQVASAGTCCLVGVIFQQTLFVANLGDSRVVLGKKVGNTGGVAAIQLSTEHNANVEAVRQELKELHPHDPQIVVLKHGVWRVKGIIQISRSIGDVYMKDAQFNREPLPAKFRLPEPMHMPILSAEPAIISHRLQPNDSFIIFASDGLWEHLSNEKAVEIVSSNPHTGSAKKLVKAALHEAARKREMRYSDLRKIDKKVRRHFHDDISVIVLFLNHDLISKGTVLDPPLSLRSALDH* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3274 497 SUPERFAMILY PP2C-like 183 475 IPR036457 -
Amo01g3274 497 Gene3D - 162 483 IPR036457 -
Amo01g3274 497 Pfam Protein phosphatase 2C 197 444 IPR001932 -
Amo01g3274 497 PANTHER ALPHABET, ISOFORM E-RELATED 110 497 - -
Amo01g3274 497 PANTHER PROTEIN PHOSPHATASE 2C 42-RELATED 110 497 - -
Amo01g3274 497 MobiDBLite consensus disorder prediction 67 88 - -
Amo01g3274 497 ProSitePatterns PPM-type phosphatase domain signature. 199 207 IPR000222 GO:0043169
Amo01g3274 497 ProSiteProfiles PPM-type phosphatase domain profile. 173 474 IPR001932 -
Amo01g3274 497 CDD PP2Cc 174 474 IPR001932 -
Amo01g3274 497 SMART PP2C_4 160 472 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3274 Amo-Chr1 104959496 104963792 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3274 107 494 PP2C-type Phosphatase Gene Family AT4G38520 55.668 5.52e-151 435
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3274 K01102 - gmx:100790813 644.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g3274 01 104959496 104963792 Amo04g0065 04 1234340 1238478 PCT
Amo04g0065 04 1234340 1238478 Amo01g3274 01 104959496 104963792 PCT