Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3267 ATGGAAGAAGGGAAGAGAGAGAAGAAGAAGAAGGAAGAAGAAGCATCCACCACTGCTACTGCTATTACTATGGCTAATTCCGTCGCATTTTCCGATGAGATTCCGATCACAAACACAAACACAATCAACACTTCTTACCCTTTCTCAAGCATCTTTGACATGATGCCACTTCCATTACTACCCTCTTCTGATCACAAAACTTCTGCCAATGGCTTCATCGACTTGCTCGCTCTCCATGACTACACTCCTTCCTTATTCGATTGGCTTCCCGCCGAAGCCACGCCGCAGCAAATCACCAGCAGCCAGCAGCAGCCTCTGCCGTCGCCGGCGAGCTCCAATGTCCCGGACTGTTCGGAGGTTTTGAACACTCCGGCGTCACCAAACTCGTCGTCGATTTCGTCTTCGTCGAACGAAGGCGGCGCCGGCGTCGGCAGCAACAACAACAACGCGGAAGAGCATAACGGTGGGAAAGTAGTTGCGGATGATGAACATGAAGCAGAGGATGAAGACGCCGATGGATCCAAAGAGAATCAAGACAAGACTAAGAAACAATTGAAAGCAAAGAAAAAGAATCAAAAGAAGCAAAGAGAACCTCGGTTTGCGTTTATGACAAAGAGCGAAGTGGATCATTTAGACGACGGTTACAGATGGCGTAAGTACGGACAGAAAGCAGTGAAAAATAGCCCTTATCCAAGGAGCTACTATCGTTGCACCACTTCCGGGTGTGGTGTTAAGAAGCGCGTGGAGCGTTCTTCCGACGACCCAAGCATTGTTGTAACTACCTATGAAGGGCAGCACACTCACCCTTGTCCCGCTACCTCACGCGCCGCACTCGCGTTCATGCACGAACCCTCCTTCGCCACCATTGGATCTTCTTCTCCACACTTTCTGCTTCCTCATCAACAACACTTCCAGCAACCGCCGCCTCCGCCTTCGTTATATAACTCCACTACTACTACTAATCCAACTCCACCTAATAATGCGTCGTCGTTTGGGACCTTCGTTCTTCAGGATGGAGCTTTTGCTGCAGCTTCTAGGTTGAGCATGGATCAAGCTTTCTTGAGAGACCATGGTCTTCTTCAGGACATTGTTCCATCTCAGATCAGGAAGGAGGATAACATCGAATGA 1128 0.4929 MEEGKREKKKKEEEASTTATAITMANSVAFSDEIPITNTNTINTSYPFSSIFDMMPLPLLPSSDHKTSANGFIDLLALHDYTPSLFDWLPAEATPQQITSSQQQPLPSPASSNVPDCSEVLNTPASPNSSSISSSSNEGGAGVGSNNNNAEEHNGGKVVADDEHEAEDEDADGSKENQDKTKKQLKAKKKNQKKQREPRFAFMTKSEVDHLDDGYRWRKYGQKAVKNSPYPRSYYRCTTSGCGVKKRVERSSDDPSIVVTTYEGQHTHPCPATSRAALAFMHEPSFATIGSSSPHFLLPHQQHFQQPPPPPSLYNSTTTTNPTPPNNASSFGTFVLQDGAFAAASRLSMDQAFLRDHGLLQDIVPSQIRKEDNIE* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3267 375 Pfam WRKY DNA -binding domain 212 269 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo01g3267 375 PANTHER WRKY TRANSCRIPTION FACTOR 48-RELATED 69 366 - -
Amo01g3267 375 MobiDBLite consensus disorder prediction 95 197 - -
Amo01g3267 375 ProSiteProfiles WRKY domain profile. 206 271 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo01g3267 375 MobiDBLite consensus disorder prediction 298 331 - -
Amo01g3267 375 Gene3D WRKY domain 195 272 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo01g3267 375 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 69 366 IPR044810 GO:0003700
Amo01g3267 375 SUPERFAMILY WRKY DNA-binding domain 203 271 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo01g3267 375 SMART WRKY_cls 211 270 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo01g3267 375 Coils Coil 175 195 - -
Amo01g3267 375 MobiDBLite consensus disorder prediction 316 331 - -
Amo01g3267 375 MobiDBLite consensus disorder prediction 95 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3267 Amo-Chr1 104787822 104789792 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3267 16 371 WRKY Transcription Factor Family AT5G49520 44.675 1.46e-60 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo01g3267 WRKY 2.2e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3267 - - gsj:114394278 308.531