Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3260 GGGTTTCGTTCCAATTTAGTGTTGGCCAAGCTGGATAGGCACAGAGGAGACCGCTATGGAAACAATAACAACAACAACAACGATGATTCTCATGGCCACCGTCACTCTTCGAGGCCGCACTCTCGCTTCTCCGATTCTCCCATGACATACCACAACTCTCGTCGGAGCCCCGCGCACTTCCGCCCTGGAGGCCGCGGCTTCCACAGCTCGCCACGTCGCTCTCCCGCTGGGCCTGGAGGTTTCCACCCAATCGGCCCCGGCGAAGGGTTCGGGCCGATGGGTGGTGACGGTTACGGAGAATACGGGTTCAACACTTACCAGGCTCCTCCTCCGCAGCTGTCTGGTCACAAGCGAGGGTTTCGTGGAGTTTCGCCAGATCGTTTTGATGGTGGAAACTTTGCCAAACTATTTGTTGGATCTGTGCCCCGAACAGCCACTGAAGAAGATATTCGACCTTTGTTTGAGGAACATGGGAATGTGATTGAGGTTGCGCTGATCAAGGATAAAAAAACTGGGCAGCATCAAGGTATTTATAATTTTAATATGCCGAGACTGTTGCTTGTTGGTTTTGGTTCCACCTTTTTTGTTCCTCGTCCTGTCATACCAGAAGGAGGCAAGACGTGTAAACCTGTAAGCTGCTCTTTGTATAGCAGATGGGATCTTGGAGGACCAAAAGATCCTGCTCTTGCAATTGTAGCTGCAGCAGTGGGTTTGGGTTATAATTTTAATATAACTGCCATAAAAGATTTTTGTTGTGCAGGTTGTTGTTTCATAAAATATGCTACCTCAGAAGAAGCTGATCAGGCAATTAGAGCATTACACAATCAGCATACCCTTCCTGGAGGTGTTGGTCCTATCCAAGTACGCTATGCTGACGGGGAGCGGGAACGGCTTGGTGCAGTTGAGTACAAATTATTTGTGGGATCTCTGAACAAACAAGCTACAGTGAAGGAAGTTGAGGAAGTTTTCTCAAAATATGGGCGGGTTGAAGATGTTTATCTCATGCGTGATGAGAAAAAGCAAAGCCGTGGATGTGGTTTTGTTAAATATTCGCATAGGGATATGGCATTGGCAGCTATAAATGCACTGAATGGGATTTATACAATGAGAGGTTGTGATCAACCTCTAATTGTGCGGTTTGCTGATCCCAAGAGACCTCGTCAAGGAGATTCTAGGGGTCCTGCACTTGGTGGCCCAGGATATGGTTCTAGATTTGATGCACCAGGCCCAAGATTTCCATCAAATATTACTGATCCCATGGGTGATCGTATGCCTCCTCCTAATGCTTGGCGTCCAATGCATGCACCAAATATGGGCCCATCCCCGAATGCTGGTTTTCATGCGGTGGGGCCTCCAATGCTTCCAAGGTCTGGTGACATGGCATTGCCTACAAATCCAGGTGGTCCTATGACTGGCATGGGAGGTCCAATAGATGACCGTTTCCAAGTGCAAAATTTTCCACCATTTTCACAACAGAATTTCAACCAGCCTATGCCACAAATTCCACCAGCCAACCAGCAACAACAAATAGCACCATTGCACAAACCGACACAATCTTCTCAGGAGTTGCCTCCTTCCCACCAGTCGTACCCGCAAGGTCCAACACCCTACTTACAAACTCCACCACCTTCATCTGTACGGCATCCTGGCCAGCCACAACTTCCACTCACTGCTGGTTCTCTACCTTCACAGCAGATTCATAGCATGAGTGGGCAGTTCCCAACTTCACAACCCCAAGCTCAGCAGAGTTCTTTGGCTACTGCATTTCCTCAGGCACCTCTTGATACTAGCGGAAAATCTGGTACAACTTTGGCTACTTCAAATAAACAGCAAGTTCCCACTGGGCAGCAGCAGACAGTTCAACCTCTTCAGCAATCCCCCTCTCAGTTAGCTCAGATGCTGTCACAGCAAACTCAGACTTTACAAGCAAGCTTTCATTCCTCCCAGCAGGCCTTCTCCCAGCTCCAACAACAACTACAGATGATACAACCATCTAGTCAGGCTAATACATTGCAGCAAAATTCAGAAGCTACTAAAAATCAGTCTCAATGGGCTGGAACCATACCGCAGACCATGGTCAGCACTGCTGCAGAAATTCCTTCATCTGCATCTGCTTCTGCTTCTGCTTCTGCTGCTGTCCCAGTGGTAAGCCCAAACACAGCTATTGTGAAATGTAATTGGACAGAGCATTTATCTCCAGAGGGTTTCAAGTATTACTACAATAGTGTCACTGGTGAAAGTAGGTGGGAGAAACCAGAGGAGTTGACATTATATGAACAGCAAAAGCAACAGCAAATGATGTCTATTCAGCAGTCTCAGTCTCAGTCACAGCCTTCAGTAATATCTGCTCAGCAACTTCCTCAAGTCCAACAGGTTCAGCCTCAAGGTAATCAAGGCCGGGTTCTCCACCATCAACAAATGCAGCAGCCCCCGGTGTTCCAGGCATACGGAGTTACAGGTCACCAAGGTATTCAGGATTATAAACAGATACAGGCATCTGGAATTTCTGCTGTTGATGCTGGACGCTACTCTCAGGGCATCCAAACTTCTCAAGAGTGGATGTGGAAAAATAAGCCTGCAGGTTCCAATCCTTGCACCCACTTCTCTACCCTGCCCCAAATGTGCATCCACACGAGTTTGAACTTGGATTTTTTGAGCTTTGAGGCAGCAGATGGAGATGTTTCAGCCTTTCAATGGCTGTAA 2703 0.478 GFRSNLVLAKLDRHRGDRYGNNNNNNNDDSHGHRHSSRPHSRFSDSPMTYHNSRRSPAHFRPGGRGFHSSPRRSPAGPGGFHPIGPGEGFGPMGGDGYGEYGFNTYQAPPPQLSGHKRGFRGVSPDRFDGGNFAKLFVGSVPRTATEEDIRPLFEEHGNVIEVALIKDKKTGQHQGIYNFNMPRLLLVGFGSTFFVPRPVIPEGGKTCKPVSCSLYSRWDLGGPKDPALAIVAAAVGLGYNFNITAIKDFCCAGCCFIKYATSEEADQAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATVKEVEEVFSKYGRVEDVYLMRDEKKQSRGCGFVKYSHRDMALAAINALNGIYTMRGCDQPLIVRFADPKRPRQGDSRGPALGGPGYGSRFDAPGPRFPSNITDPMGDRMPPPNAWRPMHAPNMGPSPNAGFHAVGPPMLPRSGDMALPTNPGGPMTGMGGPIDDRFQVQNFPPFSQQNFNQPMPQIPPANQQQQIAPLHKPTQSSQELPPSHQSYPQGPTPYLQTPPPSSVRHPGQPQLPLTAGSLPSQQIHSMSGQFPTSQPQAQQSSLATAFPQAPLDTSGKSGTTLATSNKQQVPTGQQQTVQPLQQSPSQLAQMLSQQTQTLQASFHSSQQAFSQLQQQLQMIQPSSQANTLQQNSEATKNQSQWAGTIPQTMVSTAAEIPSSASASASASAAVPVVSPNTAIVKCNWTEHLSPEGFKYYYNSVTGESRWEKPEELTLYEQQKQQQMMSIQQSQSQSQPSVISAQQLPQVQQVQPQGNQGRVLHHQQMQQPPVFQAYGVTGHQGIQDYKQIQASGISAVDAGRYSQGIQTSQEWMWKNKPAGSNPCTHFSTLPQMCIHTSLNLDFLSFEAADGDVSAFQWL* 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3260 900 MobiDBLite consensus disorder prediction 529 549 - -
Amo01g3260 900 MobiDBLite consensus disorder prediction 484 528 - -
Amo01g3260 900 MobiDBLite consensus disorder prediction 469 620 - -
Amo01g3260 900 ProSitePatterns WW/rsp5/WWP domain signature. 727 752 IPR001202 GO:0005515
Amo01g3260 900 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 303 383 IPR000504 GO:0003723
Amo01g3260 900 PANTHER FLOWERING TIME CONTROL PROTEIN FCA ISOFORM X1 105 812 - -
Amo01g3260 900 SMART rrm1_1 304 379 IPR000504 GO:0003723
Amo01g3260 900 SMART rrm1_1 135 289 IPR000504 GO:0003723
Amo01g3260 900 MobiDBLite consensus disorder prediction 382 418 - -
Amo01g3260 900 PANTHER TRANSFORMER-2-RELATED 105 812 - -
Amo01g3260 900 SUPERFAMILY WW domain 726 759 IPR036020 GO:0005515
Amo01g3260 900 CDD RRM2_FCA 304 383 IPR034645 -
Amo01g3260 900 Gene3D - 723 768 - -
Amo01g3260 900 MobiDBLite consensus disorder prediction 760 804 - -
Amo01g3260 900 MobiDBLite consensus disorder prediction 1 96 - -
Amo01g3260 900 SUPERFAMILY RNA-binding domain, RBD 303 404 IPR035979 GO:0003676
Amo01g3260 900 Pfam WW domain 725 752 IPR001202 GO:0005515
Amo01g3260 900 Gene3D - 130 298 IPR012677 -
Amo01g3260 900 ProSiteProfiles WW/rsp5/WWP domain profile. 721 754 IPR001202 GO:0005515
Amo01g3260 900 SUPERFAMILY RNA-binding domain, RBD 130 297 IPR035979 GO:0003676
Amo01g3260 900 CDD WW 724 754 IPR001202 GO:0005515
Amo01g3260 900 Gene3D - 299 391 IPR012677 -
Amo01g3260 900 MobiDBLite consensus disorder prediction 556 620 - -
Amo01g3260 900 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 305 371 IPR000504 GO:0003723
Amo01g3260 900 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 136 176 IPR000504 GO:0003723
Amo01g3260 900 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 134 176 IPR000504 GO:0003723
Amo01g3260 900 SMART ww_5 722 754 IPR001202 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3260 Amo-Chr1 104755395 104764188 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3260 238 366 Eukaryotic Initiation Factors Gene Family AT4G34110 26.718 2.14e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3260 - - gmx:100798390 812.757