Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3239 ATGCCACGCCCAGGGCCAAGGCCTTATGAGTGTGTGAGGAGAGCATGGCACAGTGAGAGGCACCAACCTGTTAGAGGTTCCATCATTCAGCAGATTTTCAGGGTCGTCAACGAAGCTCACACCCCTGCTACCAAGAAGAACAAGGAATGGCAAGAGAAGCTACCCGTCGTTGTTCTCAAGGCCGAAGAAATCATGTACTCCAAAGCCAATTCCGAGGCAGAGTACCTGAATCCTGATACCCTCTGGGAACGCCTCAATGACGCCATTAACACCATCATAAGGAGAGATGAGACCACAGAGACCGGTGACCTCTTGCCCCCATGTGTTGAAGGGGGATATATCATATCTGCGACTGTAGAGTTTTGTGCACTTGATATTAGTGATTTTGAGCTGCCACTGATGTGTGATTTTGTTCTTTTGGTTTTCTGGGTCCATTCATTCCTGTTATGCTCTTCATCAGCTGCACTTAATCTGGGATGCAAACCTGTGAGGACTTCAAGAAGTGATAGGCACAATAACCCCAGGACATACCTTTCTCCAAGAACTCAACACCCTCCTCCTCCTCCTCCTCCTCATCCTCCTTCTGGTCCTCCTAGGCCTGTTGGGGAGAATCCTTATGCAAGGGTATCAAGTTCTGGCGTTTCACAAATCCCTGTGTCAGATTCTAGAATCCATGCCCAGCAAAATACTAGGATGATGGGTTCACCTAACTACCCCTTCTCAGAGAGTTTCCCTTCTGGTCATCACCAGCATTTGGCAATGGAAACCAAACCCCCATCGAACTTTGGTTCAGTTTACCCCTTGTACTACGGATATGAAGCCAAAGAGCCTCAACTAAGGACGACCACCGTCGATAACTCGGGTCCTGAAACTATTTTTGTTGGCAGACCAGTCATTACTCCGGTCCCCGAGCCATCTGGAATTGGTTTGTTGGAAAACTTTCCCTATGGTAGATACCCCCATTTGCCAAACAGAGCTGGAAAAGAAACTGTTGTAGGCATGCCGGAGGGATTGCGGGACACAGAATGTGATTTATCCTTGAGGTTGGGTCGGTGTTTTCATCCATGTTCAAGCAGCAAGAATTGTTCAGCATATGAAACAGAAGATGCTGGTTTAGGAGCCCCTCAAGGGGGCACCAAGTTTAGTCATCTATCATTGCAGAGAAATAAAGAGTTCTGTTTTTATCCTAGAGAGACATCTTATGGTACCATTGGCCCCAGTTCTGCCAGATGTAATGGAGAGCGTGAATATCAGAACTTAGAGGCAACTTTACGGAAGCGAAAAGCACCTATAGGTAACAACGAGGAGGATGGGCAATTTTGCCGGCATCTAGGAGTCCCATCGAATCAGTTTACCGGTAGAATGCAAGGACCAGGTATGTATCAACCACTGCAATGA 1398 0.4742 MPRPGPRPYECVRRAWHSERHQPVRGSIIQQIFRVVNEAHTPATKKNKEWQEKLPVVVLKAEEIMYSKANSEAEYLNPDTLWERLNDAINTIIRRDETTETGDLLPPCVEGGYIISATVEFCALDISDFELPLMCDFVLLVFWVHSFLLCSSSAALNLGCKPVRTSRSDRHNNPRTYLSPRTQHPPPPPPPHPPSGPPRPVGENPYARVSSSGVSQIPVSDSRIHAQQNTRMMGSPNYPFSESFPSGHHQHLAMETKPPSNFGSVYPLYYGYEAKEPQLRTTTVDNSGPETIFVGRPVITPVPEPSGIGLLENFPYGRYPHLPNRAGKETVVGMPEGLRDTECDLSLRLGRCFHPCSSSKNCSAYETEDAGLGAPQGGTKFSHLSLQRNKEFCFYPRETSYGTIGPSSARCNGEREYQNLEATLRKRKAPIGNNEEDGQFCRHLGVPSNQFTGRMQGPGMYQPLQ* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3239 465 PANTHER COACTIVATOR CBP, KIX DOMAIN-CONTAINING PROTEIN-RELATED 154 458 - -
Amo01g3239 465 PANTHER COACTIVATOR CBP, KIX DOMAIN-CONTAINING PROTEIN-RELATED 1 110 - -
Amo01g3239 465 MobiDBLite consensus disorder prediction 180 201 - -
Amo01g3239 465 PANTHER COACTIVATOR CBP, KIX DOMAIN-CONTAINING PROTEIN-RELATED 1 110 - -
Amo01g3239 465 Gene3D Coactivator CBP, KIX domain 11 92 IPR036529 GO:0003712|GO:0006355
Amo01g3239 465 MobiDBLite consensus disorder prediction 163 221 - -
Amo01g3239 465 PANTHER COACTIVATOR CBP, KIX DOMAIN-CONTAINING PROTEIN-RELATED 154 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3239 Amo-Chr1 104467749 104470349 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3239 - - ahf:112723293 820.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g3239 01 104467749 104470349 Amo03g2212 03 88280235 88287895 PCT