Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3236 ATGTTCTTCCTCCGAGTTCACTCGGTCGACTCGGAGCAGCCTCTGGACCCTGAATCCATCTTCTCCGAGAACGATGAAGATTCGAGCCCTAAATTCAGGGAGCGAAGAGGGGTTCTCCACTTGTTCCGGAGCTCCTCTCACTCCTCGATCCCAAGCCCTAGCTCTCGCTCTTCTCTTGTCTTCATTCTCGCCGTTCCCAATTACCTCTCCTTCGATGACCTCATTCGCTGGTGCGGACCCCACCTCCACCATCTCCACCGCCTCCTCTTCATCAGGAATGATGGAATGGAAGATCGCTACAGTGTGCTGATTGAACTTCAGGATCAGCGTGCAGCTGATGCGTTTTATACCAATTTCAATGGCAAGACTTTTTCTCCTGGAGAGGCAGAGGTGTGCCATATCCTGTTTTTGGTTTCTGTGGAGTACTCAGAATGTGCAGATATTGCTGGGACTCCTCCTGATGGATGTACTGAAATACCAACTTGTCCAGTTTGCCTCGAGAGATTGGACCCGGATAGAAGTGGAATACTCACTACACTTTGCGATCACTCCTTTCAATGCCCTTGTGTTTCAAAGTGGACGTACTTGTCTTGCCAGGTCTGTCGATTCTGTCAACAGCAAGATGAGAAACCAAGTTGTTTTGTTTGTGGAACATTAGATGATTCCTGGGTTTGTATGATTTGCGGGTTTGTTGGATGTGGAAGATATAAGGAAGGACATGCTATCCAGCATTGGAAAGACACCCAGCACTGTTATTCTCTTGATTTCAAAACACAGCAAATATGGGATTATGTAGGTGACAGTTACGTCCATCGGCTGAACCAGAATCAATCCAAAGTTGATGGCAAGTTCGAGGGAATGAATTACCGCTGTATTCTACAGAATGGAGACTGTGATGAGTGTGAATGTCATGATGATCTAGAAATTGATGGAGCCCTCTACAACAGCAAAGTTGAGGCAATTTTGGATGAATACAACCGTCTTCTAACATCTCAGCTGGAAACTCAAAGACAATATTATGAATCTTTGCTAGCAGAGGCAAAAAGCAAAGTGGACAGTTCTGTCTCTGAAGCAGTGGAGAAAGCTGTAACTTCTGGATTGCAGGACATCCAAGATAAACTGGAAAAGTGTACAGAAGAGAGAAATGGTGTTGCTGAGGAGAATAAGAAGCTCATACAAAATCAACAGCTATGGCGAAACAAAATTAAAGAAGCTGAAGAGAGGGAAGCCGCATTAGTAAAATTCATGAACCAAAAGATAACTGATATGGAGGAACAGATTAGGGATGTCAAGATTTTTGTGCAAGCACAAAAAACAATTGATAAGATGACAGATTCAAATGGAATCAAGGACGGAACAGTGTTACCAGTGGCTTATGAGCAATCTACTCCCGGCAACAGTAAGAGAAACAGGAAGTCTGGTCGAAGGCGAAATTAG 1437 0.4454 MFFLRVHSVDSEQPLDPESIFSENDEDSSPKFRERRGVLHLFRSSSHSSIPSPSSRSSLVFILAVPNYLSFDDLIRWCGPHLHHLHRLLFIRNDGMEDRYSVLIELQDQRAADAFYTNFNGKTFSPGEAEVCHILFLVSVEYSECADIAGTPPDGCTEIPTCPVCLERLDPDRSGILTTLCDHSFQCPCVSKWTYLSCQVCRFCQQQDEKPSCFVCGTLDDSWVCMICGFVGCGRYKEGHAIQHWKDTQHCYSLDFKTQQIWDYVGDSYVHRLNQNQSKVDGKFEGMNYRCILQNGDCDECECHDDLEIDGALYNSKVEAILDEYNRLLTSQLETQRQYYESLLAEAKSKVDSSVSEAVEKAVTSGLQDIQDKLEKCTEERNGVAEENKKLIQNQQLWRNKIKEAEEREAALVKFMNQKITDMEEQIRDVKIFVQAQKTIDKMTDSNGIKDGTVLPVAYEQSTPGNSKRNRKSGRRRN* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3236 478 PANTHER BRCA1-ASSOCIATED PROTEIN 1 478 - -
Amo01g3236 478 Pfam BRCA1-associated protein 2 53 148 IPR011422 -
Amo01g3236 478 ProSiteProfiles Zinc finger RING-type profile. 162 202 IPR001841 -
Amo01g3236 478 ProSiteProfiles Zinc finger UBP-type profile. 196 291 IPR001607 GO:0008270
Amo01g3236 478 SUPERFAMILY RING/U-box 178 277 - -
Amo01g3236 478 Pfam Zn-finger in ubiquitin-hydrolases and other protein 198 273 IPR001607 GO:0008270
Amo01g3236 478 PANTHER BRAP2 RING ZNF UBP DOMAIN-CONTAINING PROTEIN 1 1 478 IPR033273 GO:0000151|GO:0004842|GO:0010029|GO:0016567
Amo01g3236 478 MobiDBLite consensus disorder prediction 1 31 - -
Amo01g3236 478 Coils Coil 367 408 - -
Amo01g3236 478 MobiDBLite consensus disorder prediction 444 478 - -
Amo01g3236 478 CDD RING-H2_BRAP2 160 203 - -
Amo01g3236 478 SMART Zf_UBP_1 212 261 IPR001607 GO:0008270
Amo01g3236 478 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 178 284 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3236 Amo-Chr1 104440010 104444281 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3236 146 248 C3H Transcription Factor Family AT2G39100 28.155 7.01e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3236 K10632 - gmx:100807397 735.332