Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3231 ATGGATAAATGGGATCTTGAACTCGGTCTTGCTCTCCCAAGCAATTCTCCTTGTGCAGGCTCTAATGATGATATGGAGGAGGAAGAGGTTACACATCCCACTCTGTGTCTCCTTCCGTTAACTCCTGGCCACTCATGGAGGAAGAAACGGCATAGGATGTACGTGAAGGTGAAGATGGAAGGTGTAGGGATTGCAAGAAAGGTTGACCTCACCATGCACCATTCATTTCACACCCTTAACCATGCCTTGCTCCACATGTTTGGAAAACCCCCTCATCAATTCTCAAACTCCTATCGCCTCCTTTTTCAGGACCAACAAGGCCATTGGCTTCTCGCCAAAGATGTCCCATGGAGGCAAGTACCTACTTCTTCTCTAAATAACCCATTTATACTTACTTAA 399 0.4612 MDKWDLELGLALPSNSPCAGSNDDMEEEEVTHPTLCLLPLTPGHSWRKKRHRMYVKVKMEGVGIARKVDLTMHHSFHTLNHALLHMFGKPPHQFSNSYRLLFQDQQGHWLLAKDVPWRQVPTSSLNNPFILT* 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3231 132 Gene3D - 47 129 - -
Amo01g3231 132 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 50 119 IPR003311 GO:0005634|GO:0006355
Amo01g3231 132 ProSiteProfiles PB1 domain profile. 52 132 IPR000270 GO:0005515
Amo01g3231 132 SUPERFAMILY CAD & PB1 domains 50 120 - -
Amo01g3231 132 Pfam AUX/IAA family 49 89 IPR033389 -
Amo01g3231 132 PANTHER AUXIN-RESPONSIVE PROTEIN IAA20 50 119 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3231 8 119 B3 DNA Binding Superfamily AT3G61830 31.034 1.26e-10 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Amo01g3231 AUX_IAA 1.1e-10 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3231 K14484 - aip:107640278 240.35