Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3227 ATGCCCCCTTCGCCCTCCATCGTCGAGCCCCTTCGCCCTCCATCGTCGAGCCCCGTCCAGCCGCCGTCGTCCAGCGCCTTTCCCTTTCTGGCAGCCACCGTGTCTTTCTCCACTCCTCTCTGCACTCTGCCACTCTCTGTCTGCATCATCAAGAATGGAGCCTCTGACTCAGTCCAATTCATTTTCTTTAAAATAGATTGTGAGAATGGAAAGCTACTAGATTGGCTAAAGCGTTTTCGTATCATCAATGGGATTGCCAGAGATCTTCTTTATTTTCATCAAGATTCAAGACATAGAATATTTTATAGAGATCTCAAGGCTGGGAATGTTTTGTTAGATGATGAATTGGATCCTAAAATCTCGGACTTTGGAATAGCAAGAAGCTTTGTAGGAAATAAAAGCGAAGCAAATACAAGACATATTGTTGGAACTTATGGCTATCTACCACCAGAGTACATAGTTGGTGGGCTGTATTCAACAAAATCTGATGTCTGTAGCTTTGGTGTACTAATATTAGAAATAGTTAGTGGGAAGCGAAATAAAGGATTCATCGATATTGACCACTACTTTAATCTTCTTGCCGATGCATGGACACTTTTAGCCAAAGGCAAGTGCTTAAAAATAGTTGATGCATCGATCAGAGACTCAATTAATTTGCCAGAAGTCATAAGAACAATTCATGTCAGTTTACTATGTGTGCAACAAAATCCAGAAAATCGACCAAGCATGTCATATGTGCTTATGATGCTGAGTAGTGAATGGGAACTACCTCAGCCAAAGAAGCCAGGGTTCTTTATTGAGAGAGATGTGGTTGGTGACCATTCTACATTAAGCAACAATGAACTCACGGTTACTCAGGTCCATGCGCGTTAG 873 0.4227 MPPSPSIVEPLRPPSSSPVQPPSSSAFPFLAATVSFSTPLCTLPLSVCIIKNGASDSVQFIFFKIDCENGKLLDWLKRFRIINGIARDLLYFHQDSRHRIFYRDLKAGNVLLDDELDPKISDFGIARSFVGNKSEANTRHIVGTYGYLPPEYIVGGLYSTKSDVCSFGVLILEIVSGKRNKGFIDIDHYFNLLADAWTLLAKGKCLKIVDASIRDSINLPEVIRTIHVSLLCVQQNPENRPSMSYVLMMLSSEWELPQPKKPGFFIERDVVGDHSTLSNNELTVTQVHAR* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3227 290 ProSiteProfiles Protein kinase domain profile. 1 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g3227 290 SMART serkin_6 35 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g3227 290 Gene3D Transferase(Phosphotransferase) domain 1 62 259 - -
Amo01g3227 290 Pfam Domain of unknown function (DUF3403) 251 290 IPR021820 GO:0004674
Amo01g3227 290 ProSitePatterns Serine/Threonine protein kinases active-site signature. 100 112 IPR008271 GO:0004672|GO:0006468
Amo01g3227 290 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 59 274 - -
Amo01g3227 290 Pfam Protein kinase domain 80 247 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g3227 290 SUPERFAMILY Protein kinase-like (PK-like) 69 250 IPR011009 -
Amo01g3227 290 PANTHER GLYCOPROTEIN S6, PUTATIVE-RELATED 59 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3227 Amo-Chr1 104304976 104307130 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3227 62 267 Receptor kinase-like Gene Family AT3G45860 51.675 4.55e-68 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo01g3227 Pkinase 1.8e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3227 - - aip:110267275 550.821