Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3226 ATGGAGAACAAGTGCGGTTGCTGGTCTGTCCTCAAACGCGGTGTTAGAGGTTCGTGCAAATCTTCTTCAGCTTCCAGACACTCCCCTAACACTATCCCTCGTACTAGTCTCGTTTATGATGCAGCAACTGAGACAAGATACCTGAATGCTAGCAATCGAGAACTATGCCCTCCGAATGAAGCTAGAGTATCTTCTGACAATCCTGATCCTCCACCTCAGGAGAATAAGGCTCCTTGCCCACTTCTTAAATTTACATTTCAAGAACTTAAAGCTGCAACCGGAAATTTCAGACCGGATAGTATTCTTGGGGAGGGTGGTTTTGGTTATGTTTTCAAAGGYTGGATAGAGGAAGACGGAACCGCCCCGGCGAAACCTGGGTCAGGGGTTACCGTGGCTGTCAAAAACTTAAAGCCAGATGGTCTTCAGGGCCATAGAGAATGGGTGGCTGAGGTTACCTTTCTCGGACAGCTTCATCATCCTAACCTTGTCAAACTTATTGGCTACTGCATTGAAGATGATCAGAGGCTTCTTGTATATGAGTTTATGACCCGGGGAAGTCTAGAGAATCATCTTTTCAGAAGAACCGTACCTCTTCCGTGGTCCAACAGGGTTAAGATTGCACTTGGTGCAGCAAAAGGATTGGCCTTCCTCCATAATGGTCCTGAACCAGTCATTTATAGAGATTTTAAAACATCAAATATTTTGCTTGATACGGAATATAATGCAAAGCTTTCAGATTTTGGTCTAGCAAAAGCSGGGCCTCAAGGAGACAAGACGCATGTTTCTACCCGAGTTGTCGGAACATATGGCTATGCTGCTCCAGAATATGTCATGACAGGGCACTTGACGGCTAAAAGTGATGTTTATAGTTTCGGAGTTGTATTACTTGAGATTTTAACAGGAAGAAGATCGATGGACAAGAAGCGCCCGAGCGGGGAACAGAATCTTGTTTCATGGGCTAGGCCATATTTAGCTGACAAGAGAAAGCTATATCAACTTGTGGATCCTCGGCTGGAATTAAATTATTCTCTAAAAGGGGTGCAGAAAATCTCTCAGTTAGCTTACAGTTGCCTCAGTAGAGACCCGAAATGCCGTCCCAACATGGACGAAGTGGTGAAAGCTCTGATGCCGCTGCAAGATCTCAATGACCTTGCAATCTTGTCATATCACTCTCGAATATCCCAGCAAGGGCGGCGAAAAAAGAAATCGGATGGAACTCCACATCTCAGCTACACACAATCRAAGAGCATCATCAGGGCTTCTCCCTTGAATYCRYGCAAGCAGCGTCGATGA 1293 0.4524 MENKCGCWSVLKRGVRGSCKSSSASRHSPNTIPRTSLVYDAATETRYLNASNRELCPPNEARVSSDNPDPPPQENKAPCPLLKFTFQELKAATGNFRPDSILGEGGFGYVFKGWIEEDGTAPAKPGSGVTVAVKNLKPDGLQGHREWVAEVTFLGQLHHPNLVKLIGYCIEDDQRLLVYEFMTRGSLENHLFRRTVPLPWSNRVKIALGAAKGLAFLHNGPEPVIYRDFKTSNILLDTEYNAKLSDFGLAKAGPQGDKTHVSTRVVGTYGYAAPEYVMTGHLTAKSDVYSFGVVLLEILTGRRSMDKKRPSGEQNLVSWARPYLADKRKLYQLVDPRLELNYSLKGVQKISQLAYSCLSRDPKCRPNMDEVVKALMPLQDLNDLAILSYHSRISQQGRRKKKSDGTPHLSYTQSKSIIRASPLNXXKQRR* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3226 430 PANTHER OS01G0588500 PROTEIN-RELATED 74 398 - -
Amo01g3226 430 SUPERFAMILY Protein kinase-like (PK-like) 78 379 IPR011009 -
Amo01g3226 430 Pfam Protein tyrosine and serine/threonine kinase 100 375 IPR001245 GO:0004672|GO:0006468
Amo01g3226 430 MobiDBLite consensus disorder prediction 56 77 - -
Amo01g3226 430 Gene3D Transferase(Phosphotransferase) domain 1 182 394 - -
Amo01g3226 430 PANTHER OS01G0588500 PROTEIN 74 398 - -
Amo01g3226 430 ProSitePatterns Protein kinases ATP-binding region signature. 102 134 IPR017441 GO:0005524
Amo01g3226 430 Gene3D Phosphorylase Kinase; domain 1 65 181 - -
Amo01g3226 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 224 236 IPR008271 GO:0004672|GO:0006468
Amo01g3226 430 CDD STKc_IRAK 102 378 - -
Amo01g3226 430 ProSiteProfiles Protein kinase domain profile. 96 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3226 Amo-Chr1 104287731 104290696 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3226 84 375 Glycoside Hydrolase AT3G07070 55.743 3.19e-111 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Amo01g3226 PK_Tyr_Ser-Thr 1.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3226 - - gmx:100785385 812.757