Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3216 ATGATGGAGTTTGTGGGCAAAATCGTGAAGAAAGAGGTCAAAGGTGTTGGGTTTGTCACCGGAACCGTCAAATCCTACGACCCTTCTTCAAGTTTCGTCGAGATCCTCTACGACAACGGCGATTCTGAGGAGCTGGAATCAAACGAAGTGGTTTTGCTTCTTCAACAAGCTCAGCCGGAGCTCGCTAAGCCAAAGACTCGGGTTGGCCGGAAGCCCAAGAAGCGCCGCCGTGTTGAGAAGAAGGCCGGAGCTGGAGACAGTTCAGGTAATGCCAATGGAAATTTGGTTTTGGAAGTTAGTGAAATTAGGGATAATTCGGAAGTGAATGGTGAATTAGGTCTTGGAATTGAGGAAAAGCTAGGAAATGGGAATGCTAATGCGAATGGGAGTGTGGAGTCAATTGTGGGTGATGGAACTCTTGGGAGGGAAATTGGGGTTGAGGGGGATTTAAATTTGAATAAGGATGTAGCCGTAAATGGAAGTTGTCTTAGGGATGAGCTTGATTTGAATTCTGGGATTAATCTCAATGAGGATTTGAATCTTAATGATGGGTGTGGTTTATTGACTTTTGATGGCACTGAGGTTGGTTTAAMGAGAAGAGATTGTATTGACTTGAATTTGGATGTCAATAATGACGATGATGTCAGCATGAATGGGGGATCTTTGGGCGGCAGGAAGTTGCAGCGGGAATGTAATTTTGATTTGAATGTCGAGGTGTGCGAAGATRTMAAGGAAACCCGCGGWGASGTTGCCAATGGCAATGGTATTTATGAGGCAAATGCCATATTGGGTAAGATGGGTCAGCTCCAAGGAGACATGACAAATCTTAATCAGAGATCTSTGGAAGTTGATGATGTTCGTAGYGATTTGAATGAGGTTTCCAATGATTTCACACCAGAGGTAGATCATGTTTCTGCCAACCATGCAGCTACAGATGCTTCTTTGTGTTCGATTGAAGGARAGGAAGRCAACGATAACAGAGGCGATRTAGCAGCTGTTGGCTCTCTTCAGGTTTCAGATGTTGTTTCTKTGGAGACTCAGCAAATGGATAGTCCTTGYGAAGCTGGTTTAGTCGTAACTCATGAAGACCAAGAGGRGACAGGAAGTCTTAGCAAACAAGGAAGRGGTCGAAGGAAAAGAAGAAAAATAGCRGATGAACTAAATAAYACCCCAGAGACAGGTTTAAGGAGGAGCTCTCGCCGGGCATTAGCTAGAAAACATGCTTCAAGCGTCATAGTWTCACTGGAGATGGATGATCCYATGGTGTCYGTGGAAACCAGTGCCATGGCAGAAGARAAACCTGTAACTGTAATATCTGGTCATGAACAGTCCAAAATTTGTCAGGCGAAGTTGCAATTACCCCCSTCTTCCCAAAATTTAAATTTAGATGATGKTCCTGTTCTTGAAGTCTTTTCTATTTATGCTTGTTTAAGGTCATTCAGYACTTTATTATTTTTGAGTCCATTTGAGTTGGAGGATCTTGTAGCTGCTTTGAAGTCCRAAACCCCCAGTRTATTATTTGATAGCATTCATGTTTCTATTTTGGAAACTCTGAGAAAGCATTTGGAATACCTTTCCAATGAGGGTATCCAATCTGCATCTGATTGTCTGAGGAATCTTAATTGGGATTTTCTGGACATTGTCACATGGCCTATTTTCATGGCCGAGTACCTTCTGATTCATGGTTCAGGATTTAAAACTAGCTTTAATCTTAACTACTCAAATTTCACAGCTGACTACTACAAACAACCTGTGAATGTGAAGGTTGGGATTCTTCAGTATCTCTGTGATGATATGATCGAAGCAGAAGCAATAAGGTCTGAGCTTAACAGGAGATCGTTGGTAACTGAGAACAGTGTTGGTTCTGATCAGAATATGTATTTTGACACTTGTAAGAAACGGAGAGCTGGAACAGATGTGTCTGGTGGCTCCTGCTTGACTGAGGAAATTGCAGATGACACTGACTGGAACAGTGATGACTGCTACCTTTGCAAGATGGATGGTAATTTAATATGCTGTGATGGTTGCCCTGCTGCATTCCACTCCAAGTGTGTTGGAATYGCAAGTGACAATCTGCCTGAAGGGGACTGGTATTGCCCTGAGTGTGCAATTGGCACACACAGGGCATGGATGAAATCACGTAGGTCACTTCGAGGAGCAGATTTGATAGGGAGTGATATTCATGGCCGTCTTTATTTTAGCAGCTATGGTTACTTGTTAGTGTCGGACTCATCTGATGAGGGGTCTTTGTTCAATTACTACCACAGAAATGATCTACATTTAGTGATTGAAGCTTTAAAGTCTATGGATACTTCGTCTGGAGGCTTATTAACGGCTATCTACAAGCATTGGGATATCCCTGCTAACCCAAGTGTGGAGACTAGTAACTTGGTCGTCTTGAACCAAAGCTCCACCAAGAACCTTCGTGCCAAGGGTGAATCTTCTGCAATGAAGACATCTTTAGCTCCCATTACTTTTTCAGAAGCATGTTTGGTGAATAATCGGGTGGTTGATGAAAGAAAGTTAGATGAAAAATCTACAATTGACTGTTGTAATCATCCTGGCCAAGAGTTTCCAAAAGCTGGGAATCGCTTGGATTCAGCAACAACTATAGAAAGTCCTTGTGCTGTTTCAGAAGGATCAGCTGATACCACACAAGTTAGACCAGGCACCGAGAATGTTCAAATGAATGGGCTTTACGATTCCAATAGATCTGATGAGTCCTTGAATCAGTCAGGGATACCAGAAAAACATCATCCAGTTGGTGACAGTTCTTTGGTATCATCTAGCTTAGATGTGGAACATAAGAGGAAATTAAGATCTGTGGATGCTAGTTGTGCCCAATTGCCTGAAGATAAGGATACCTCTGATGTGCCTTTTGGAATAGACTATGTAAACTATTATAGCTTTGCCCGAACRGCCTCATTAATTGCACAYGAGTTGATGAGTAAGTCACCTGAAAAGATAAATAAGAATATTRTATTGACTGAAGACGACATAATTTCAGAGCAAGTCAAGGCCATTATGAAGAAATCTACAAGCTTCTGCTGGCCAAGTATTCAAAACCTGCATGCAGCTGCCCAAAAGGAAAATTGTGGGTGGTGCTTTTCTTGCAAAGTTGCAAATGATGACAGGGATTGCTTGTTTAATTCTGTMATGAAGCCTGTTTGGGAAGTGTCTGAAAGTACTTTTGGTGGACTTCAKCCCAGCAAGATCCAGAATGRACATCTCAGGGATATCATCTGTCATATTCTCTCCCTTGAGGATCGATTACGCGGGATTTTGTTGGGTCCATGGTTGAATTTACAACAAACTGATCTTTGGCATAAGGAGCTTATGAAGACCGGTGATCTTCGTCCTGCTAAAAAGTTATTGCTTATTTTGGAATCCAATTTGCGGCCTTTTGCTTTTGCAGCAGATTGGTTAAAGCATGTGGATTCTATTGGTACCATGGGATCAGCTATTCATTTTGTGGCCAGTTTACGCACAAGGCATGGTATTGGGAAGAAAAGGGCTAGGTTTTCTGATGCTGAACCCAATCCATCTTCAAACAATGCAAGCGGTTTGGGAATGTATTGGTGGAGAGGTGGTAAGCTTTCCCGGCAGTTGTTTAATTGCAAGAGTTTGCCCCGCTCATTGGTTGCCAAGGCTGCTAGACAAGGGGGTTGCTCAAAGATTCCAGGCATTTTGTATCCTGAAAATTCAGATTTTGCTAGGCGAAGCAAATGCATTGCATGGCGGGCTGCTGTTGAGATGTCAACAAGTGTTGAGCAGCTTGCTGTACAGGTTAGAGAGCTTTATTCAAACATAAAGTGGCGTGATATTGAAAATAGCCATYCTCAATATGTCTTGGACAAGGAATCTAGAAAAGCAGTTAGACTGTTCAAGAAAGCAATTGTACGCAGGAAGTCCACTGAAGGGAAATCTGTGAAGTACCTTATTGATTTTGGGAAGAGAAGGGCTATTCCTGATGTTGTTACCAAACATGGTTCTGTGTTGGAAGAACCCTCAAGTGAGAGAAAAAAATATTGGCTGGAAGAATCTTATTTACCCATGCATCTTTTAAAGAATTTTGAGGAAAAAAGAATCATTCGGAAGTCCGATGTAAAGAAACTTGGGAAAACTATTGAGATTGGTAGAGTTAATAGGAAGGTTCCTCAACAAAGAGGATTTCCRTATTTGTTTTCTAGACTGGAAAGATCTGATTGTCATCAGTGTGGGCACTGCAACAAAGATGTTCCTATCAGGGATGCTGTGAGCTGCCAATATTGCAAAGACAAACCTTACATTAGAAGCCAAAAACATGTAATACCATTTAGCTCAGGTAGTGTAAGACAAAAACAAACAATTGATAGAACCAACAATTGTACAAGTTACACCCAC 4383 0.4162 MMEFVGKIVKKEVKGVGFVTGTVKSYDPSSSFVEILYDNGDSEELESNEVVLLLQQAQPELAKPKTRVGRKPKKRRRVEKKAGAGDSSGNANGNLVLEVSEIRDNSEVNGELGLGIEEKLGNGNANANGSVESIVGDGTLGREIGVEGDLNLNKDVAVNGSCLRDELDLNSGINLNEDLNLNDGCGLLTFDGTEVGLXRRDCIDLNLDVNNDDDVSMNGGSLGGRKLQRECNFDLNVEVCEDXKETRGXVANGNGIYEANAILGKMGQLQGDMTNLNQRSXEVDDVRSDLNEVSNDFTPEVDHVSANHAATDASLCSIEGXEXNDNRGDXAAVGSLQVSDVVSXETQQMDSPCEAGLVVTHEDQEXTGSLSKQGRGRRKRRKIADELNNTPETGLRRSSRRALARKHASSVIVSLEMDDPMVSVETSAMAEEKPVTVISGHEQSKICQAKLQLPPSSQNLNLDDXPVLEVFSIYACLRSFSTLLFLSPFELEDLVAALKSXTPSXLFDSIHVSILETLRKHLEYLSNEGIQSASDCLRNLNWDFLDIVTWPIFMAEYLLIHGSGFKTSFNLNYSNFTADYYKQPVNVKVGILQYLCDDMIEAEAIRSELNRRSLVTENSVGSDQNMYFDTCKKRRAGTDVSGGSCLTEEIADDTDWNSDDCYLCKMDGNLICCDGCPAAFHSKCVGIASDNLPEGDWYCPECAIGTHRAWMKSRRSLRGADLIGSDIHGRLYFSSYGYLLVSDSSDEGSLFNYYHRNDLHLVIEALKSMDTSSGGLLTAIYKHWDIPANPSVETSNLVVLNQSSTKNLRAKGESSAMKTSLAPITFSEACLVNNRVVDERKLDEKSTIDCCNHPGQEFPKAGNRLDSATTIESPCAVSEGSADTTQVRPGTENVQMNGLYDSNRSDESLNQSGIPEKHHPVGDSSLVSSSLDVEHKRKLRSVDASCAQLPEDKDTSDVPFGIDYVNYYSFARTASLIAHELMSKSPEKINKNIXLTEDDIISEQVKAIMKKSTSFCWPSIQNLHAAAQKENCGWCFSCKVANDDRDCLFNSVMKPVWEVSESTFGGLXPSKIQNXHLRDIICHILSLEDRLRGILLGPWLNLQQTDLWHKELMKTGDLRPAKKLLLILESNLRPFAFAADWLKHVDSIGTMGSAIHFVASLRTRHGIGKKRARFSDAEPNPSSNNASGLGMYWWRGGKLSRQLFNCKSLPRSLVAKAARQGGCSKIPGILYPENSDFARRSKCIAWRAAVEMSTSVEQLAVQVRELYSNIKWRDIENSHXQYVLDKESRKAVRLFKKAIVRRKSTEGKSVKYLIDFGKRRAIPDVVTKHGSVLEEPSSERKKYWLEESYLPMHLLKNFEEKRIIRKSDVKKLGKTIEIGRVNRKVPQQRGFPYLFSRLERSDCHQCGHCNKDVPIRDAVSCQYCKDKPYIRSQKHVIPFSSGSVRQKQTIDRTNNCTSYTH 1461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3216 1461 ProSiteProfiles DDT domain profile. 464 524 IPR018501 -
Amo01g3216 1461 PANTHER PHD-FINGER AND DNA BINDING DOMAIN-CONTAINING PROTEIN 2 1426 - -
Amo01g3216 1461 Pfam PHD-finger 661 703 IPR019787 -
Amo01g3216 1461 ProSitePatterns Zinc finger PHD-type signature. 661 702 IPR019786 -
Amo01g3216 1461 SMART testlast3 464 524 IPR018501 -
Amo01g3216 1461 MobiDBLite consensus disorder prediction 879 929 - -
Amo01g3216 1461 PANTHER PHD FINGER FAMILY PROTEIN 2 1426 - -
Amo01g3216 1461 MobiDBLite consensus disorder prediction 363 382 - -
Amo01g3216 1461 CDD PHD2_CHD_II 661 702 - -
Amo01g3216 1461 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 648 723 IPR013083 -
Amo01g3216 1461 MobiDBLite consensus disorder prediction 879 910 - -
Amo01g3216 1461 MobiDBLite consensus disorder prediction 62 92 - -
Amo01g3216 1461 Pfam DDT domain 469 520 IPR018501 -
Amo01g3216 1461 SMART PHD_3 660 703 IPR001965 -
Amo01g3216 1461 ProSiteProfiles Zinc finger PHD-type profile. 658 705 IPR019787 -
Amo01g3216 1461 SUPERFAMILY FYVE/PHD zinc finger 648 710 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3216 Amo-Chr1 104022174 104029633 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3216 2 1436 PHD Transcription Factor Family AT5G12400 41.318 0.0 933
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Amo01g3216 DDT 2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3216 - - gmx:100800973 1792.7