Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3212 ATGGCCATCTTTGCATTATTATTGATGCTGTTACTCCAATTGTCAATAATTTCTACCTCAGCAGTTATCTTGAGATCAAATGATTGTGGCACTGATTGGGTAGCTCGTTCATATTCTAGTGATGGTGAAGAACTGTTTTACATAAATGGAAATGTAGTTAACAAAGTTGCTTTCTGTGAGGCCCTCCAATTGTACATTGCAAATGGTTGCAATTTGAAGGACTACTTTGGAAGTAACAACTGCGCAATGGATGGCTCATTTGTTAACTTACCTTTGATGGCAGGAAGGAAACTACTTCAGAAGAATTCGAGCAGTAAATCCGAATCGCAAGGGGTTTCCAACGATGTGTCTCCCAAAGTTGGGCTTTTCGCTGGCGGAGCATTGTTGGTATGTTGTGCTGTTCTTTGTCCATGTATTTATGGGAAGAAGCGAAAAGCAACTGCTCATGCTGTTTTGACCAAGGACCCGAATTCAATATTGGACTCGGCTTCCTCCTTCGAAGCAAATTCTGTCCCGGAAAAGGTCCAAGTCCCAGCCAGTCCACTTCGAGTGCCACCTAGTCCTTCAAGATTCTCAGCGTCTCCAAAACTCAAAAGAATTGAATCGTTGCATCTCAACCTCAATCAGATTGCAAGAGCTACCCGTAACTTCTCAGAAACATTGCAGATAGGAGAAGGAGGTTTTGGAACTGTCTACAAGGCTCAGTTAGAAGATGGCCACGTCGTGGCTGTAAAACGTGCAAAAAGGGAACATTTTGAGAGCTTGAGAACTGAATTCAGCAGTGAAGTTGAACTTCTGGCTAAAATTGATCATCGGAACCTAGTGAAGCTACTAGGTTATATTGAAAAAGGACATGAACGCCTTCTTATTACAGAGTATGTGCCGAATGGTACTCTTCGAGAACACTTAGATGGTCAGCGTGGAAAAATCCTAGACTTCAATCAGCGCCTGGAAATTGCTATTGATGTTGCTCATGGCTTGACCTATTTGCATCTGTATGCAGAATTCATTAATATTGTACACTACAGTTTAGATGATCAGATTATCTGCCAATTGATTCCTAGCCTTTATCTTGGAACAGAGAAGCCAATTATCCATCGAGATGTGAAATCATCCAACATTCTTCTGACAGAAAGCATGCGAGCTAAAGTTGCTGATTTTGGATTTGCAAGAATTGGCCCTATGAACTCCGATCAAACACACATTTCTACCAAAGTGAAGGGAACAGTTGGTTATTTGGATCCTGAGTATATGAAAACATACCAACTCACTACCAAGAGTGATGTTTACTCATTTGGAATTTTGCTTTTAGAAATTTTAACAGGTCGTCGTCCTGTGGAGTTGAAGAAAACTGTTGAAGAGAGGGTTACACTCAGATGGGCTTTCAGGAAGTTCAATGAAGGAAGGGTGGTGGAGCTGGTGGATCCGTTAATGGAAGAAGCTGTAAACTCTGATGTTCTGATGAAGATGTTTGATTTGGCATTTCAGTGTGCAGCACCCGTCCGGACAGATAGACCTGACATGAAAGCAGTGGGAGAGCAATTGTGGTCAATTAGGGCAGATTACTTTAAGAATTCAAGAAGTAATTAG 1590 0.4157 MAIFALLLMLLLQLSIISTSAVILRSNDCGTDWVARSYSSDGEELFYINGNVVNKVAFCEALQLYIANGCNLKDYFGSNNCAMDGSFVNLPLMAGRKLLQKNSSSKSESQGVSNDVSPKVGLFAGGALLVCCAVLCPCIYGKKRKATAHAVLTKDPNSILDSASSFEANSVPEKVQVPASPLRVPPSPSRFSASPKLKRIESLHLNLNQIARATRNFSETLQIGEGGFGTVYKAQLEDGHVVAVKRAKREHFESLRTEFSSEVELLAKIDHRNLVKLLGYIEKGHERLLITEYVPNGTLREHLDGQRGKILDFNQRLEIAIDVAHGLTYLHLYAEFINIVHYSLDDQIICQLIPSLYLGTEKPIIHRDVKSSNILLTESMRAKVADFGFARIGPMNSDQTHISTKVKGTVGYLDPEYMKTYQLTTKSDVYSFGILLLEILTGRRPVELKKTVEERVTLRWAFRKFNEGRVVELVDPLMEEAVNSDVLMKMFDLAFQCAAPVRTDRPDMKAVGEQLWSIRADYFKNSRSN* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3212 529 CDD STKc_IRAK 223 515 - -
Amo01g3212 529 ProSitePatterns Serine/Threonine protein kinases active-site signature. 364 376 IPR008271 GO:0004672|GO:0006468
Amo01g3212 529 SMART serkin_6 217 517 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g3212 529 Gene3D Phosphorylase Kinase; domain 1 189 293 - -
Amo01g3212 529 Gene3D Transferase(Phosphotransferase) domain 1 294 528 - -
Amo01g3212 529 ProSiteProfiles Protein kinase domain profile. 217 523 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g3212 529 PANTHER OS07G0166700 PROTEIN 356 526 IPR045272 GO:0004714|GO:0006468
Amo01g3212 529 SUPERFAMILY Protein kinase-like (PK-like) 201 518 IPR011009 -
Amo01g3212 529 PANTHER NODULATION RECEPTOR KINASE-LIKE PROTEIN 11 344 - -
Amo01g3212 529 PANTHER OS07G0166700 PROTEIN 11 344 IPR045272 GO:0004714|GO:0006468
Amo01g3212 529 PANTHER NODULATION RECEPTOR KINASE-LIKE PROTEIN 356 526 - -
Amo01g3212 529 Pfam Protein tyrosine and serine/threonine kinase 222 332 IPR001245 GO:0004672|GO:0006468
Amo01g3212 529 Pfam Protein tyrosine and serine/threonine kinase 361 515 IPR001245 GO:0004672|GO:0006468
Amo01g3212 529 ProSitePatterns Protein kinases ATP-binding region signature. 223 245 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3212 Amo-Chr1 103970784 103973433 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3212 202 518 Receptor kinase-like Gene Family AT5G59700 42.271 1.32e-71 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Amo01g3212 PK_Tyr_Ser-Thr 9.4e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3212 - - aprc:113845864 787.334