Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3211 ATGCCAGAGATGAGAGAAAAAGGAATAGGCGTTGGGAAAAGGGAAGAGGAGGTGGAGGCTCGAGTTAGAGCACCAAACGCACCCACCACCAGCAGCGGCAGCAGCACGGCGGTCGTGGAAGCCATGCCGTTGGCGTTGAGGAAAGACACGGTTAATGGTGACCCTGAGTCTCTTCACCAACCTTTGCTTTCTTCCCAAAGATCCTTAGTCAACTCTACTTCTCAGGTTGCCATCGTAGGCTCCAATGTCTCCCCAATTGAGAGCCTTGACTACGAGATCATAGAGAACGAGTTCTTCAAGCAGGATTGGAGGAGCAGAGGGGCCTCTCAGATATTCCAATACATATTCATGAAGTGGCTCTTGTGCTTCCTCATTGGTTTGATCGTTAGCCTCATCGCATTCTGCAACAATCTCGCTGTTGAGAATCTCGCTGGCATCAAGTTTGTTATCACATCCAATATGATGTTGGAAAGGAGGTTTCTGTTGGCATTTGCAGTATTTTTCGCTTCGAATTTGGGTCTCACTATCTTTTCTGCTGTAATCACGGCTTTGATAGCACCGGCAGCTACTGGTTCCGGTATACCGGAGGTGAAGGCTTACCTAAATGGGGTGGATGCACCTGGAATTTTTACTGTACGGACTCTGTTTGTTAAGATTATTGGAAGCATTACAGCAGTGTCATCATCTCTTCTTATTGGGAAAGCAGGGCCCTTGGTCCATACAGGTGCATGTGTGGCATCGTTGTTGGGGCAGGGCGGGTCGAAGAGATATGGTTTAACGTGGAAGTGGTTACGCTTTTTTAAGAATGACCGAGATCGACGAGATTTGGTAATGTGTGGATCAGCTGCTGGAATTGCTGCTGCCTTTCGTGCCCCAGTTGGTGGGGTGTTGTTTGCTCTTGAAGAGATGACATCTTGGTGGAGAAGTGCACTTCTCTGGAGAGCTTTCTTCACAACAGCAATAGTTGCAATTGTGCTTCGTGCTATGATTGATGTATGTTTAAGTGGTAAATGTGGGTTATTTGGTAAAGGGGGACTGATAATGTTTGATGTTTATTCAGCAAGTATTTCATATCATTTGGCGGAAGTTCCTCTTGTGTTTATTCTTGGCGTTATAGGAGGGATTCTTGGAAGCTTATATAACTTTATGCTTAGCAAAGTTCTTCGTGTATACAATTTTATCAATGAGAAAGGCACCATATGCAAAATTGTGCTTGCCTGTGTAATCTCCATTTTTACCTCCTTTCTTCTTTTTGGATTGCCATGGTTTGCATCTTGCCAACCTTGTCCTCTTGATGCAGCAGAGCCTTGTCCAACAATAGGCCGATCCGGCAACTTCAAGAAATTCCAATGCCCACCCGATCACTACAATGATCTTGCCAGCCTCATTTTTAACACAAACGATGATGCTATTAGGAATCTATTTAGCAGGGACACTAATGAAGAGTTTCAGTATTCATCAATGTTCATCTTTTTCATCACATGCTTTTTCTTAAGTATCTTTAGCTATGGTGTTGTTGCTCCAGCTGGTCTCTTTGTGCCAGTTATTGTTACTGGTGCATCTTATGGTCGCTTTGTTGGCATGTTGGTAGGTAAAAGGACCAATCTTCACCACGGCCTTTATGCTGTTCTTGGTGCTGCTTCTTTTCTCGGTGGATCGATGAGGACAACAGTTTCGCTATGTGTAATTATGCTGGAATTGACAAATAATTTGTTATTGCTACCATTGATCATGATGGTGCTTTTGGTATCGAAGACTGTAGCTGATGCTTTCAATGCAAATATATATGACCTTATTATGAAAGCCAAAGGTTTCCCTTATTTAGAAACTCATGCTGAACCGTATATGAGGCAGCTAACGGTAGGTGACGTTGTCACGGGGCCACTTCAGATGTTTAACGGCATTGAGAAAGTCCGCAATATAGTGTTCATTCTCAAAACTACAAGGCACAATGGGTTTCCTGTTATCGATGAGCCTCCACTTTCTGAAGCACCAGTTTTATCAGGTTTAATCCTCCGTGACCATCTTGTTACTTTGTTAAAGAATAAAGTTTTTTCATCCACACCAAGGGCGATAGGGGATGATGGCTTCAAGAAGTTTACATCAGATGATTTTGCAAAGAAGGGTTCAAACAAAGGTGAAAAGATAGAAGATATACAACTAACAGAGGAAGAAATGGAAATGTTCATAGATTTACATCCATTTACAAATACATCACCATATACTGTTGTGGAGACAATGTCACTGGGAAAGGCCCTTACACTTTTTCGAGAAGTAGGTTTAAGGCACCTGCTAGTGATACCCAAGATCACTGGTAGATCACCTGTAGTGGGTATACTAACGCGACACGACTTCATGCCGGAACATATATTGGGGGTGCATCCTTTGCTGGTAAGTAGCAGGTGGAAAAGACTAAGGTTCCGGTTCCCTTGTCTGGGAAATCTCTTCTCTGGCTTCTGA 2460 0.4346 MPEMREKGIGVGKREEEVEARVRAPNAPTTSSGSSTAVVEAMPLALRKDTVNGDPESLHQPLLSSQRSLVNSTSQVAIVGSNVSPIESLDYEIIENEFFKQDWRSRGASQIFQYIFMKWLLCFLIGLIVSLIAFCNNLAVENLAGIKFVITSNMMLERRFLLAFAVFFASNLGLTIFSAVITALIAPAATGSGIPEVKAYLNGVDAPGIFTVRTLFVKIIGSITAVSSSLLIGKAGPLVHTGACVASLLGQGGSKRYGLTWKWLRFFKNDRDRRDLVMCGSAAGIAAAFRAPVGGVLFALEEMTSWWRSALLWRAFFTTAIVAIVLRAMIDVCLSGKCGLFGKGGLIMFDVYSASISYHLAEVPLVFILGVIGGILGSLYNFMLSKVLRVYNFINEKGTICKIVLACVISIFTSFLLFGLPWFASCQPCPLDAAEPCPTIGRSGNFKKFQCPPDHYNDLASLIFNTNDDAIRNLFSRDTNEEFQYSSMFIFFITCFFLSIFSYGVVAPAGLFVPVIVTGASYGRFVGMLVGKRTNLHHGLYAVLGAASFLGGSMRTTVSLCVIMLELTNNLLLLPLIMMVLLVSKTVADAFNANIYDLIMKAKGFPYLETHAEPYMRQLTVGDVVTGPLQMFNGIEKVRNIVFILKTTRHNGFPVIDEPPLSEAPVLSGLILRDHLVTLLKNKVFSSTPRAIGDDGFKKFTSDDFAKKGSNKGEKIEDIQLTEEEMEMFIDLHPFTNTSPYTVVETMSLGKALTLFREVGLRHLLVIPKITGRSPVVGILTRHDFMPEHILGVHPLLVSSRWKRLRFRFPCLGNLFSGF* 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3211 819 PRINTS Plant CLC chloride channel signature 92 100 IPR002251 GO:0005247|GO:0006821|GO:0016020
Amo01g3211 819 PRINTS Plant CLC chloride channel signature 303 311 IPR002251 GO:0005247|GO:0006821|GO:0016020
Amo01g3211 819 PRINTS Plant CLC chloride channel signature 317 327 IPR002251 GO:0005247|GO:0006821|GO:0016020
Amo01g3211 819 PRINTS Plant CLC chloride channel signature 459 475 IPR002251 GO:0005247|GO:0006821|GO:0016020
Amo01g3211 819 PRINTS Plant CLC chloride channel signature 335 342 IPR002251 GO:0005247|GO:0006821|GO:0016020
Amo01g3211 819 ProSiteProfiles CBS domain profile. 736 796 IPR000644 -
Amo01g3211 819 SUPERFAMILY Clc chloride channel 96 610 IPR014743 -
Amo01g3211 819 MobiDBLite consensus disorder prediction 1 35 - -
Amo01g3211 819 PRINTS Chloride channel signature 595 609 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Amo01g3211 819 PRINTS Chloride channel signature 282 301 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Amo01g3211 819 PRINTS Chloride channel signature 187 204 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Amo01g3211 819 PRINTS Chloride channel signature 507 527 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Amo01g3211 819 PRINTS Chloride channel signature 557 576 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Amo01g3211 819 PRINTS Chloride channel signature 218 237 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Amo01g3211 819 PRINTS Chloride channel signature 539 555 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Amo01g3211 819 Gene3D - 609 788 IPR046342 -
Amo01g3211 819 SUPERFAMILY CBS-domain pair 611 786 IPR046342 -
Amo01g3211 819 CDD CBS_pair_voltage-gated_CLC_euk_bac 611 788 - -
Amo01g3211 819 Pfam CBS domain 737 785 IPR000644 -
Amo01g3211 819 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 55 810 - -
Amo01g3211 819 SMART cbs_1 739 790 IPR000644 -
Amo01g3211 819 SMART cbs_1 628 681 IPR000644 -
Amo01g3211 819 Gene3D Clc chloride channel 110 608 - -
Amo01g3211 819 MobiDBLite consensus disorder prediction 1 22 - -
Amo01g3211 819 Pfam Voltage gated chloride channel 176 589 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Amo01g3211 819 PANTHER CHLORIDE CHANNEL PROTEIN 55 810 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3211 Amo-Chr1 103965543 103969960 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3211 56 810 Ion Channels AT5G33280 75.894 0.0 1164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3211 K05016 - gmx:100817901 1241.1