Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3179 ATGGGTTCCGCCACCAGTAGACTAGACGGTTCTCGCCCTCCCACGGCGAGGCTCAACCGCAACAACACCCGCTTCAGCCTCTCCTCTCTTCTCTGCGGTGCTTCCACCTCTCGCTCCACCTATCAGATGGAAGAACATCCATCTGAACTTCAGGTAGATTTAGCAACAGAACCTGATGGTGGAACTCAGGAAATCACTGAGGAATCATCTTTATCATGTACAGAAGCTAGAATCAGCTGCAGCCACCATGCTGAAGCCGCTACCTCATCCAATACAAGAACTGAGTCTCATCGGCATATTGGTATTGAAGGTTCTTCCATAAATGTTGCAGCAAGTAGTCAGAGGAAGTGCTTGTCTGAATGTAAGGAGCTAGTCCCTCCTCATCAGGTAAGTGCTGGTCATAGTGGTAATGAATCATATAGGGATAGTAGCAATACAGCTAGTACTTCTTTTGTAGAGCAACAATCTTCAGATCCAGTCTCTGTAAATGTTTCTGCTAACAAAGATGGAGTCAATAATGTTGATGATCCAGTGGTTAGTGGTGTATCTCAAATCTCTCATGAGACAGTGCATCCATGGAGTTCGAGCCCTCAGGAGAATGGATATTTTAGTTCTGGGGAAATTTCTGTTGAGAATGATGCATTAATGGCTACCCAGAGTCCTTCTTCGGATCCCGTTTCTCAAGTTTCCACTTTACCGGCACCTTCTCCTATGCCCGAAGATGAACCTCGCAGAGAGGCAATACCTTCAGGATTAGGTATTCTTGTGTCTAATCGGGAAAGAGTGCAGGGAAATGATAGTGTGCTTCAAGTTGATGTTGTCACAATATCCTCCAACATCTTGTCTGGCAGCACTGCTGATGCCAATGATCATGATACCGGAAGGAGTGGTAGAAGAATATTTTGGGATGCTTTTTCACGGCGTAGTTCTAGAAGGCTTGGCGACTCTCAAACAATTGTWTTCTCTGCTGGCGGTGCCGATGATCCTAGATCTCAAGATAGATGGCTTGTTGATCTTGGTGGGGATTTCTCCAACGATGGGTTTGGAGGTGCTTCTTCTGGATATGTYGGCAGTAGAATTCACAGATTTAATGAAAGAATGCGGCARTCAAGATCCGAGATCTGGGAAAGGCTTCGAGGTGGCCTTGATGATTTTGGTCGTTTGAATTCTTCATGTCCATCAGGACTTCATGCAGATGGTATGTGCTCATGTGAGTCTTTACCAACAGCTGAAGAATCTAGCACTCGAGCAAGTATTTCAAGAATTGTCATGCTGGCTGAAGCTCTGTTTGAGGTTTTAGATGAAATCCATCGGCAACCTGTATCGCTTTCCCTATCCATGGTTTCTCTRCCCGCACCTGAATCAGTTGTCGACTCTTTRCCTCTTAAGTCTCACAAAAAGGTCGATGCAGCTGACGGTGGCAGTGATGCTGAACAATGTTACATATGTTTGGCGGAGTATGAAGAAGGGGACCAAATSKGAGTTCTTCCTTGCAACCATGAGTATCACATGTCGTGCGTTGATAAGTGGCTTAAAGAAATACATGGCGTATGCCCTCTTTGTCGTGGCAATGTTTGTGGAGGGTTCACGGAGTCTTCTGCCAACTCAGTGCCATCTCATTGA 1623 0.4553 MGSATSRLDGSRPPTARLNRNNTRFSLSSLLCGASTSRSTYQMEEHPSELQVDLATEPDGGTQEITEESSLSCTEARISCSHHAEAATSSNTRTESHRHIGIEGSSINVAASSQRKCLSECKELVPPHQVSAGHSGNESYRDSSNTASTSFVEQQSSDPVSVNVSANKDGVNNVDDPVVSGVSQISHETVHPWSSSPQENGYFSSGEISVENDALMATQSPSSDPVSQVSTLPAPSPMPEDEPRREAIPSGLGILVSNRERVQGNDSVLQVDVVTISSNILSGSTADANDHDTGRSGRRIFWDAFSRRSSRRLGDSQTIVFSAGGADDPRSQDRWLVDLGGDFSNDGFGGASSGYVGSRIHRFNERMRQSRSEIWERLRGGLDDFGRLNSSCPSGLHADGMCSCESLPTAEESSTRASISRIVMLAEALFEVLDEIHRQPVSLSLSMVSLPAPESVVDSLPLKSHKKVDAADGGSDAEQCYICLAEYEEGDQXXVLPCNHEYHMSCVDKWLKEIHGVCPLCRGNVCGGFTESSANSVPSH* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3179 540 MobiDBLite consensus disorder prediction 132 170 - -
Amo01g3179 540 MobiDBLite consensus disorder prediction 38 70 - -
Amo01g3179 540 MobiDBLite consensus disorder prediction 215 252 - -
Amo01g3179 540 SMART ring_2 480 521 IPR001841 -
Amo01g3179 540 MobiDBLite consensus disorder prediction 215 234 - -
Amo01g3179 540 Pfam Ring finger domain 479 522 IPR001841 -
Amo01g3179 540 MobiDBLite consensus disorder prediction 127 178 - -
Amo01g3179 540 ProSiteProfiles Zinc finger RING-type profile. 480 522 IPR001841 -
Amo01g3179 540 SUPERFAMILY RING/U-box 461 525 - -
Amo01g3179 540 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 535 - -
Amo01g3179 540 MobiDBLite consensus disorder prediction 1 22 - -
Amo01g3179 540 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 535 - -
Amo01g3179 540 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 444 526 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3179 Amo-Chr1 103711174 103715004 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3179 394 526 C3H Transcription Factor Family AT5G45290 54.422 1.10e-41 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3179 - - gmx:100783604 781.556