LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo01g3177	ATGACTGCAGCAGCCACCATGTGTGTTGAGGAAGCTGAGCAAGTTGAGCATCATGATCATCAAGATATGGAGAATACTAAGAAGGAAGACATGATTCATAACAAAAAGTGGCCTTTGCATTGTGATAATCATAATCTCTTGATGGACACCACCTCTTCTTTTGCATCTTCCACTGCAAACTCACTCCCTCTGGAAAGCATATGTGAGGAGACAGTGATTGCAGACAAGAAACAGAACGGTTCAAGCTTTGTCCCGGCTCTGCGCTCCGGCGAATGGTCTGATATCGGAGGCCGGCCTTACATGGAAGATACACACATATGCATTGGAGACATGGCAAAAAGATTTGGATATAATAACAACCTACTTTCTGAGGAAGCTGTTTCATTTTATGGTGTATTTGATGGACATGGAGGGAAGAGCGCGGCTCAATTCGTGCGCGATCATCTGCCTAGGATCATTGRTGAGGATGCAGGCTTTCCTTTGGAACTTGAGAAGGTTGTTACAAAGTCTTTTTTGGACACTGATGCAGAGCTTAAAACATACTCTCTTGAATCTTGCCTCTCTTCTGGAACCACTGCACTCACTGCAATTATATTCGGAAGGTCATTGCTTGTAGCCAATGCAGGGGACTGCAGGGCTGTGTTGTCGCGTCATGGCGCGGCAATAGAAATGTCCAAGGATCACAGGCCTTACTGCATCAAAGAGAGAAATCGAATCGAGTCCCTAGGTGGATTCATTGATGATGGCTACCTGAATGGTCAGTTAGGTGTTACTCGCGCTCTAGGGGACTGGCATCTTGAAGGAATGAAGGACACTGGTGGAGGTGGTGGACCATTGAGTGCTGAGCCTGAACTCAAATTGATGACATTGACCAAAGAAGATGAATTCTTGATAATAGCAAGTGATGGAATTTGGGATGTTTTCCGGAGCCAAAATGCTGTGGATTTTGCTCGGAGGAGGCTTCAAGAACACAATGATGTGAAGCAATGTTGCAAGCAAATAGTAGAGGAAGCAATAAAGAGAGGAGCAACAGATAACTTAACGGTTGTGATGGTGTGTTTTCACTCAGATCCACCACCCCCTGTGGTTGTGGAAAGAGCAAGAGTTAGAAGAAGCATATCTGCTGAGGGACTGCATAACCTCAAATGCCTGCTACAAGGTTAG	1164	0.4527	MTAAATMCVEEAEQVEHHDHQDMENTKKEDMIHNKKWPLHCDNHNLLMDTTSSFASSTANSLPLESICEETVIADKKQNGSSFVPALRSGEWSDIGGRPYMEDTHICIGDMAKRFGYNNNLLSEEAVSFYGVFDGHGGKSAAQFVRDHLPRIIXEDAGFPLELEKVVTKSFLDTDAELKTYSLESCLSSGTTALTAIIFGRSLLVANAGDCRAVLSRHGAAIEMSKDHRPYCIKERNRIESLGGFIDDGYLNGQLGVTRALGDWHLEGMKDTGGGGGPLSAEPELKLMTLTKEDEFLIIASDGIWDVFRSQNAVDFARRRLQEHNDVKQCCKQIVEEAIKRGATDNLTVVMVCFHSDPPPPVVVERARVRRSISAEGLHNLKCLLQG*	388

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo01g3177	387	ProSitePatterns	PPM-type phosphatase domain signature.	129	137	IPR000222	GO:0043169
	Amo01g3177	387	ProSiteProfiles	PPM-type phosphatase domain profile.	88	354	IPR001932	-
	Amo01g3177	387	Pfam	Protein phosphatase 2C	100	346	IPR001932	-
	Amo01g3177	387	Gene3D	-	68	357	IPR036457	-
	Amo01g3177	387	CDD	PP2Cc	88	354	IPR001932	-
	Amo01g3177	387	PANTHER	PROTEIN PHOSPHATASE 2C 27-RELATED	7	375	-	-
	Amo01g3177	387	SUPERFAMILY	PP2C-like	80	355	IPR036457	-
	Amo01g3177	387	SMART	PP2C_4	78	352	IPR001932	-
	Amo01g3177	387	PANTHER	PROTEIN PHOSPHATASE 2C	7	375	IPR015655	GO:0004722\|GO:0006470

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo01g3177	Amo-Chr1	103698539	103700665	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo01g3177	48	387	PP2C-type Phosphatase Gene Family	AT2G25620	56.941	8.84e-132	381

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	DBP	Amo01g3177		PP2C	6.1e-70	CL0238