Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3176 ATGGCTGAACAAACCGAGAAGGCTTTTCTCAAGCAACCTAAAGTGTTTCTATGGGATGCCATTGAAGGAACCTATATTGACAAGAAATGCCCCTTTACCGGAACTGTTTCCATCCGTGGCCGAATCTTAGCTGGAACTTGTCACAGTGCTAAGATGAATAGGACTATCATTGTTAGGAGGAATTATCTTCATTTTATCAAGAAGTATCAGAGAGATGTAAATAATGATCGAATTTTGCTTTGTTTGCTTATTTATTTATTTAGATACGAGAAAAGACATTCGAATATTCCTGCACATATATCACCCTGCTTCCGTGTGAAGGAAGGAGATCATGTTATTATTGGCCAATGCAGGCCACTTTCAAAGACGGTGAGGTTCAATGTGTTGAAAGTGATCCCAGCTGGATCTTCAAGTGGTGCAAAGAAGGCATTTGCTGGAATTTGA 444 0.3964 MAEQTEKAFLKQPKVFLWDAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRDVNNDRILLCLLIYLFRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSGAKKAFAGI* 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3176 147 Pfam Ribosomal protein S17 45 130 IPR000266 GO:0003735|GO:0005840|GO:0006412
Amo01g3176 147 SUPERFAMILY Nucleic acid-binding proteins 39 135 IPR012340 -
Amo01g3176 147 PANTHER 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER 19 146 IPR000266 GO:0003735|GO:0005840|GO:0006412
Amo01g3176 147 Pfam Ribosomal_S17 N-terminal 19 43 IPR032440 -
Amo01g3176 147 PANTHER BNAA06G38660D PROTEIN 19 146 - -
Amo01g3176 147 Gene3D - 1 146 - -
Amo01g3176 147 PRINTS Ribosomal protein S17 family signature 76 99 IPR000266 GO:0003735|GO:0005840|GO:0006412
Amo01g3176 147 PRINTS Ribosomal protein S17 family signature 109 119 IPR000266 GO:0003735|GO:0005840|GO:0006412
Amo01g3176 147 PRINTS Ribosomal protein S17 family signature 119 126 IPR000266 GO:0003735|GO:0005840|GO:0006412
Amo01g3176 147 ProSitePatterns Ribosomal protein S17 signature. 109 121 IPR019979 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3176 Amo-Chr1 103688931 103690233 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3176 1 147 Cytoplasmic Ribosomal Protein Gene Family AT5G23740 66.477 3.95e-76 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3176 K02949 - rcu:8266659 211.075