Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3175 ATGGAAGCTGGAAGGTGCTTTAGCTCTTGGCTTAGTTTCCCTATTATTCTTCAACTAAAGAATAAGGAAGCTGCGTACTTATACCCGGCCAAGGAAGTCCCTTGTTGGATGATTTTGGGAAGCAACTCCCATTCATGGCAGGGGCTCTTCCCTTATATCATAATTTCGTCATCTGAGTTCAACCCTGGCAGTATGCAGTTAAGCACATGTTTTGAACAACTTCTATTTGTTATCTACCTTATGCATGGTATTGATGATTTTGGAATCAGGTGTTGCGTGGTCTTGTGGAGAATGGGAAGTACTGGTACTGACAAGATGCCAGGCAATAACAGCACAGGAAGTTCAGAAACCACTATTGAGATAAAGATCAAGACCTTGGATTCACAGACTTACACCCTCAGAGTGGATAAACAGATGCCAGTCCCTGCTCTGAAAGAACGGATTGCTTCTGTCACTGGAGTGTTATCACATCGGCAGCGCTTAATTTGCCAAGGAAAGGTTCTGAAGGACGATCAACTCCTGTCTGCTTACCTAGATGTTGAAGATGGTCATACCTTGCATCTGGTTTCTAGGCAACCTGATCTACCAGGATTTTTGCCCGGTCATTCAGGGGCTGACCCAAATTCAAGCACAAGTCATGGCCACAGTAGTCAAATATCCCCGGGTGTAGTCATTGAAACTTTCAATGTGCCTGTTCAGGGAGATGGAGTTACTCCTGAATTCAGTAGGATTGTTTCTGCTGTACTAGGCTCTATTGGAATTCCAAACTTCGGAAGTGGTGTTGAAGGGATTGATGTCAGGGAGCATGACTCCCAAGGCTTTGGAAGAACTTCAGGTTCCAGTGGTCTTTCAGATTCATCCCATCCTCAGCCTGAACAAACTGGTTTGCGGTATTCATCAGATAGGTCGCGTAATACCTTTGTACATCCAGCAGCAGCTTCTTTGGGATCTTTGCAGCCTCCTGTTATTCCCGATTCTTTGACAACACTATCCCAATTTCTGAGTCATATAAGTCACGAATTTGATGCAATTGTCAGAGAAGGGGGCAATAATGTCCAAGCAGCTGAGGCTCATAGGAATGAAGAAATGGGGTCTGCTTCGTCACGATTGGGTTCAACAGCAGAAGCACTTACATCACCTGCATCCTTGGCAGAAGTCATGCTATCTACCAGACGAATGATGATTGAACAAGCTGGGGAATGCCTACTTCAACTTGCAAGACACCTGGAGAATCAGGCAAATGTAACTGATCATTTGATGCGGTCAAGCATTCAGTCTAGAGCTTTGAGGACTGGAGTTCTGTTCTATAACCTGGGTGCATTATTCCTTGAGCTTGGCCGCACAACCATGACATTGCGCTTGGGTCAAAGTCCGTCTGAAGCTGTAGTTAATGGTGGGCCTGCAGTTTTCATATCTCCGTCTGGTCCTAACCATATCATGGTTCAGCCTCTTCCTTTTCAACCTGGAGCGAACTTTGGTACTGTCCCCATAGGAACTGCTCAGTCTAACGCAAGTTTAGGGGTCTCAACAGCCACACCAAATGCCAGTCAAGAAGAACGTGCTGATACACAGTCTGCTTCAGTACAAAGAAATCAAGGTGAAGGTCCTGCTAATCAGGCAGCCTCAAGGCGTTCAGATGTGGCTGGTGCTGGGGAGCAAGGAGTAAGGATTGTGCCAATTAGAACCATGGTTGCAACAGTACCAGGTTCCTTAGGTCGTCCACCTGCAGAACCATCTGGTAATTCTATAGGGGTTTACTATCCGGTTCTCGGGAGATTTCAACAGGTATCTTCAGGGCATGGAAATAGTGAACAAGGATCTCAACCAGCTAGTCAGCATCATGCTGTGCAACAGTCCAGTCATGAAAACACATTGCAAAGGCAAAACGAAGATTCTGCAAGGAATGGATCCTCATCAACTCCTACCACAAGCTCGAATTCCCGTGTGGTGAATATCAATATCCTGGCAGCTGGTGGGGCCCAGAATAATCAGGAGTCTGAGCGACAGTTACCAAACAGTGTTCTTCAGTTTATAAGGACCCTGTTTCCTGGGGGAGAAATTCATGTTGAAGACTTGAATTTACAGGGAACAAATTCAGGTTCTACCCCAGAGCAAGCTGCAACAGCAAGGGCAGCTCAGGCCCCTGAAGCTGAACCTAGAGTTAGTGATGAAGGAAGGTTTTTGTCAAACATACTCCGCGAAATCATTCCCCTCGTGTCTCAACAAACAGGCTCTGGAAGAAATCCTTCAGAGGAACAAGCAGCTCAGGATTCTTCATCACAGGTGGAAACTGATGCAGGGACATCACGAAGGCGGAATGGTTCAGATCCAAGCCCCCCTGATTCTAAACGCCAAAAGGTTTTCTTTCTATTTCTTCTTTCTAATGCAGAGAGAAGAGAACCTGGATCTTCTTGGCTATGGAGTGATGGAGAGGATAATGTACATGATGCAGTTGTGGAAGATTGTGATCGTAACCATCGGAATTCAGGGCGGATGTGTTGA 2502 0.4596 MEAGRCFSSWLSFPIILQLKNKEAAYLYPAKEVPCWMILGSNSHSWQGLFPYIIISSSEFNPGSMQLSTCFEQLLFVIYLMHGIDDFGIRCCVVLWRMGSTGTDKMPGNNSTGSSETTIEIKIKTLDSQTYTLRVDKQMPVPALKERIASVTGVLSHRQRLICQGKVLKDDQLLSAYLDVEDGHTLHLVSRQPDLPGFLPGHSGADPNSSTSHGHSSQISPGVVIETFNVPVQGDGVTPEFSRIVSAVLGSIGIPNFGSGVEGIDVREHDSQGFGRTSGSSGLSDSSHPQPEQTGLRYSSDRSRNTFVHPAAASLGSLQPPVIPDSLTTLSQFLSHISHEFDAIVREGGNNVQAAEAHRNEEMGSASSRLGSTAEALTSPASLAEVMLSTRRMMIEQAGECLLQLARHLENQANVTDHLMRSSIQSRALRTGVLFYNLGALFLELGRTTMTLRLGQSPSEAVVNGGPAVFISPSGPNHIMVQPLPFQPGANFGTVPIGTAQSNASLGVSTATPNASQEERADTQSASVQRNQGEGPANQAASRRSDVAGAGEQGVRIVPIRTMVATVPGSLGRPPAEPSGNSIGVYYPVLGRFQQVSSGHGNSEQGSQPASQHHAVQQSSHENTLQRQNEDSARNGSSSTPTTSSNSRVVNINILAAGGAQNNQESERQLPNSVLQFIRTLFPGGEIHVEDLNLQGTNSGSTPEQAATARAAQAPEAEPRVSDEGRFLSNILREIIPLVSQQTGSGRNPSEEQAAQDSSSQVETDAGTSRRRNGSDPSPPDSKRQKVFFLFLLSNAERREPGSSWLWSDGEDNVHDAVVEDCDRNHRNSGRMC* 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3175 833 PANTHER SCYTHE PROTEIN UBIQUITIN-LIKE DOMAIN PROTEIN 98 787 - -
Amo01g3175 833 Gene3D - 112 197 - -
Amo01g3175 833 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 98 787 - -
Amo01g3175 833 MobiDBLite consensus disorder prediction 596 649 - -
Amo01g3175 833 MobiDBLite consensus disorder prediction 273 303 - -
Amo01g3175 833 MobiDBLite consensus disorder prediction 204 219 - -
Amo01g3175 833 ProSiteProfiles Ubiquitin domain profile. 119 195 IPR000626 GO:0005515
Amo01g3175 833 SUPERFAMILY Ubiquitin-like 108 194 IPR029071 -
Amo01g3175 833 MobiDBLite consensus disorder prediction 195 219 - -
Amo01g3175 833 MobiDBLite consensus disorder prediction 505 553 - -
Amo01g3175 833 MobiDBLite consensus disorder prediction 692 708 - -
Amo01g3175 833 MobiDBLite consensus disorder prediction 692 722 - -
Amo01g3175 833 MobiDBLite consensus disorder prediction 505 539 - -
Amo01g3175 833 MobiDBLite consensus disorder prediction 739 775 - -
Amo01g3175 833 MobiDBLite consensus disorder prediction 739 786 - -
Amo01g3175 833 SMART ubq_7 119 191 IPR000626 GO:0005515
Amo01g3175 833 MobiDBLite consensus disorder prediction 269 303 - -
Amo01g3175 833 Pfam Ubiquitin family 121 192 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3175 Amo-Chr1 103680292 103686912 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3175 119 191 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 36.986 9.01e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3175 K23390 - gmx:100783070 946.806