Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3162 ATGGGGAAGAAAAAGAAGCAAGTAGGAGAAACAAGTGAAGATGGTGGAAATCAAGGTGAGGATCAAGGGCAAGTGGGAGAGAGCAGCAGCACCAACGAATATGAGAGTGATCCGGCCTCATCTATATCCATGTCTCAGGAGTTGAAGGATGAGGGGAACAAACTGTTCCAAAGGAGGGACCTTAGAGGGGCATTGGTGAAATATGAGAAAGCTCTCAAATTGTTACCAAGGAATCATGCAGATGTGTCATATCTGAGGAGTAACATGGCTGCATGCTACATGCAGATGGGACGGAGCCAGTACCCGAGGGCGATTCGCGAATGCGATTTGGCTCTTGAGGTAACACCAAGATATAGCAAAGCTCTGTTGAAGAGGGCAAGGTGTTATGAGGCTTTAAATAGGCTGGATTTAGCTCTGAAGGATGTTAATGCTGTTGTGGAGACGGATCCAAATAATGCCACGGCGTTGGAGATCTCGGAAAAGGTGAAAATTGCACTTGAGAAGAAAGGGTTAAGAGTAAATGGTTCAGTAATTGAATTGCCTCCAGACTATGTTGAACCGATTAATGTTGTGCCGCAAGAAAACGTGGTGAAAGAGAAGGGGCGCAAGAAAAAGAGCAATAAACAGGAGGAGAAGGCTCCTGATAACAAAATTGTAGAAAAGCAAGACAAGAAGGAATCTGCAGAGGATAAGGCTGATGACATTGTTGTTGAGAAGAAGACAAACAAATCCAAAAAGAAGAAGGCTAAGGACAAAGTTGAGGAGAAGAAGGATGACATTAAGGAGGTTATAGAGGTGAAGAGTAATGATAGAACAGATGATCTACCCAAGAAAGCAGTAAAATTTGTTTTTGGCGAGGATATAAGATGCGCTCAACTACCTGCTCATTGCAGCTTCTTGCAGCTAAGAGAAACTATTTATGATCGGTTCCCAGGCCTAGGACCCATTCTTGTCAAATACAGGGACCATGAAGGTGATTTGGTTACAATCACTTGTGATGATGAGTTAAGATGGGCTGAAACAGGATCCGAGAGTTCTATCCGGTTGTATATAATAGCAGCTGCTCCTGAGCAGGATCAATTCTTTGAAAGGCTCAAAGTAAAGGTGGGGAAAAAGGCTGTTGTGGTTGATGTACCTGATGAAAGTTGTGAGGTAAAACCAAAGAAAATTGTTGGCTCATCTTGCATTGAGGATTGGATAGTTCAATTTGCCAAGCTATTCAAGAACCATCTTGGATTTGAATCTGACAGATATCCGGATTTTCATGACCTTGGGATGAAATTCTATTCCGAGGCTTTGGAGGAGACTGTTACATGTAATGAAGCACAAGACTTATTTAACATGGCAAGAGATAAGTTCCAAGAGATGAGTGCTCTAGCATTGTTCCACTGGGGAAATGTGCTTGCATCAAGGGCAAGGAAGAAAGTATATTTAACAGATGATTTTTCTAAACAGAACATATGCGAACGAATCATGAGCTGTTATGAATGGGCAAAGGGTGAATTTTCTGATGCGGGAGAAAAATATGTAGCTTCCATTCAAATCAAGCCGGATTTTTATGAAGCATTCCTAGCACTAGGGCAGCAGCAGTTTGAGCAAGCAAAACTTTCTTGGTATCATGCTCTCAGTAGTAATGTCGATCTACAAACATGGTCATCCACCGAGGTTCTTCAGCTTTACAACGATGCTGAGGATAATATAGAGAAAGGAATGCAGATATTTGAAGCATCAGGGGGGAAGAAATACTTGAGTAAAGCCTTTAGTTCAAAGAATGCAAGAAGACATCTACAATACATGGGGTTGCATGTACTTGCCAAAAATATATCCTCAGAGGAAGTTGCTACACAGCAGGCAAATATGAAAGCTCTAATTAATCTTCTATGGGGTACCATGCTATATGAACGCTCCATTGTAGAATTCAAAATAGGTTCACCATCATGGAATGAAACACTGGGAGTAGCAGCTGAGAAGTTTGAACTTGCTGGAGCTTCTTCATCGGATATATCTTTGACGTTGAAGGATCACTGTTCAAATAATGCTGCAGCAGATGGTCCAGGATTCAACATTGAAATAATAGTACAGGCATGGAGTGATATAAATGAAACTAAAAGGTGGAAGCGTGTAATTCCTTCATTTCGTTTGGAGCCCTTGCTTAGAAGGCGAGCTTCAAACCTTGATCAGGCATCTGAGCTTCCATGA 2199 0.4184 MGKKKKQVGETSEDGGNQGEDQGQVGESSSTNEYESDPASSISMSQELKDEGNKLFQRRDLRGALVKYEKALKLLPRNHADVSYLRSNMAACYMQMGRSQYPRAIRECDLALEVTPRYSKALLKRARCYEALNRLDLALKDVNAVVETDPNNATALEISEKVKIALEKKGLRVNGSVIELPPDYVEPINVVPQENVVKEKGRKKKSNKQEEKAPDNKIVEKQDKKESAEDKADDIVVEKKTNKSKKKKAKDKVEEKKDDIKEVIEVKSNDRTDDLPKKAVKFVFGEDIRCAQLPAHCSFLQLRETIYDRFPGLGPILVKYRDHEGDLVTITCDDELRWAETGSESSIRLYIIAAAPEQDQFFERLKVKVGKKAVVVDVPDESCEVKPKKIVGSSCIEDWIVQFAKLFKNHLGFESDRYPDFHDLGMKFYSEALEETVTCNEAQDLFNMARDKFQEMSALALFHWGNVLASRARKKVYLTDDFSKQNICERIMSCYEWAKGEFSDAGEKYVASIQIKPDFYEAFLALGQQQFEQAKLSWYHALSSNVDLQTWSSTEVLQLYNDAEDNIEKGMQIFEASGGKKYLSKAFSSKNARRHLQYMGLHVLAKNISSEEVATQQANMKALINLLWGTMLYERSIVEFKIGSPSWNETLGVAAEKFELAGASSSDISLTLKDHCSNNAAADGPGFNIEIIVQAWSDINETKRWKRVIPSFRLEPLLRRRASNLDQASELP* 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3162 732 PANTHER PROTEIN PHOX3 1 728 - -
Amo01g3162 732 Coils Coil 218 270 - -
Amo01g3162 732 Pfam PB1 domain 279 344 IPR000270 GO:0005515
Amo01g3162 732 Gene3D Tetratricopeptide repeat domain 42 172 IPR011990 GO:0005515
Amo01g3162 732 PANTHER PROTEIN CLMP1 1 728 IPR044517 -
Amo01g3162 732 MobiDBLite consensus disorder prediction 1 48 - -
Amo01g3162 732 MobiDBLite consensus disorder prediction 197 232 - -
Amo01g3162 732 SUPERFAMILY TPR-like 45 163 IPR011990 GO:0005515
Amo01g3162 732 MobiDBLite consensus disorder prediction 12 48 - -
Amo01g3162 732 SMART PB1_new 277 354 IPR000270 GO:0005515
Amo01g3162 732 ProSiteProfiles TPR repeat profile. 119 152 IPR019734 GO:0005515
Amo01g3162 732 SUPERFAMILY CAD & PB1 domains 278 346 - -
Amo01g3162 732 CDD PB1 280 351 - -
Amo01g3162 732 ProSiteProfiles TPR repeat profile. 45 78 IPR019734 GO:0005515
Amo01g3162 732 SMART tpr_5 45 78 IPR019734 GO:0005515
Amo01g3162 732 SMART tpr_5 83 118 IPR019734 GO:0005515
Amo01g3162 732 SMART tpr_5 119 152 IPR019734 GO:0005515
Amo01g3162 732 ProSiteProfiles PB1 domain profile. 277 354 IPR000270 GO:0005515
Amo01g3162 732 Gene3D - 277 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3162 Amo-Chr1 103554010 103557241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3162 15 152 Calmodulin-binding Proteins AT3G25230 29.448 6.27e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3162 - - adu:107458605 1381.31