Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3132 ATGGGAAGTACTGGTACTGACAAGATGCCAGGCAATAACAGCACAGGAAGTTCAGAAACCACTATTGAGATAAAGATCAAGACCTTGGATTCACAGACTTACACCCTCAGAGTGGATAAACAGATGCCAGTCCCTGCTCTGAAAGAACGGATTGCTTCTGTCACTGGAGTGTTATCACATCGGCAGCGCTTAATTTGCCAAGGAAAGGTTCTGAAGGACGATCAACTCCTGTCTGCTTACCATGTTGAAGATGGTCATACCTTGCATCTGGTTTCTAGGCAACCTGATCTACCAGGATTTTTGCCCGGTCATTCAGGGGCTGACCCAAATTCAAGCACAAGTCATGGCCACAGTAGTCAAATATCCCCGGGTGTAGTCATTGAAACTTTCAATGTGCCTGTTCAGGGAGATGGAGTTACTCCTGAATTCAGTAGGATTGTTTCTGCTGTACTAGGCTCTATTGGAATTCCAAACTTCGGAAGTGGTGTTGAAGGGATTGATGTCAGGGAGCATGACTCCCAAGGCTTTGGAAGAACTTCAGGTTCCAGTGGTCTTTCAGATTCATCCCATCCTCAGCCTGAACAAACTGGTTTGCGGTATTCATCAGATAGGTCGCGTAATACCTTTGTACATCCAGCAGCAGCTTCTTTGGGATCTTTGCAGCCTCCTGTTATTCCCGATTCTTTGACAACACTATCCCAATTTCTGAGTCATATAAGTCACGAATTTGATGCAATTGTCAGAGAAGGGGGCAATAATGTCCAAGCAGCTGAGGCTCATAGGAATGAAGAAATGGGGTCTGCTTCGTCACGATTGGGTTCAACAGCAGAAGCACTTACATCACCTGCATCCTTGGCAGAAGTCATGCTATCTACCAGACGAATGATGATTGAACAAGCTGGGGAATGCCTACTTCAACTTGCAAGACACCTGGAGAATCAGGCAAATGTAACTGATCATTTGATGCGGTCAAGCATTCAGTCTAGAGCTTTGAGGACTGGAGTTCTGTTCTATAACCTGGGTGCATTATTCCTTGAGCTTGGCCGCACAACCATGACATTGCGCTTGGGTCAAAGTCCGTCTGAAGCTGTAGTTAATGGTGGGCCTGCAGTTTTCATATCTCCGTCTGGTCCTAACCATATCATGGTTCAGCCTCTTCCTTTTCAACCTGGAGCGAACTTTGGTACTGTCCCCATAGGAACTGCTCAGTCTAACGCAAGTTTAGGTAGTGGACTTGGTTCAAGTTTTTTCCCAAGGCGGATTGATATACAGATACGACGAGGGGTCTCAACAGCCACACCAAATGCCAGTCAAGAAGAACGTGCTGATACACAGTCTGCTTCAGTACAAAGAAATCAAGGTGAAGGTCCTGCTAATCAGGCAGCCTCAAGGCGTTCAGATGTGGCTGGTGCTGGGGAGCAAGGAGTAAGGATTGTGCCAATTAGAACCATGGTTGCAACAGTACCAGGTTCCTTAGGTCGTCCACCTGCAGAACCATCTGGTAATTCTATAGGGGTTTACTATCCGGTTCTCGGGAGATTTCAACAGGTATCTTCAGGGCATGGAAATAGTGAACAAGGATCTCAACCAGCTAGTCAGCATCATGCTGTGCAACAGTCCAGTCATGAAAACACATTGCAAAGGCAAAACGAAGATTCTGCAAGGAATGGATCCTCATCAACTCCTACCACAAGCTCGAATTCCCGTGTGGTGAATATCAATATCCTGGCAGCTGGTGGGGCCCAGAATAATCAGGAGTCTGAGCGACAGTTACCAAACAGTGTTCTTCAGTTTATAAGGACCCTGTTTCCTGGGGGAGAAATTCATGTTGAAGACTTGAATTTACAGGGAACAAATTCAGGTTCTACCCCAGAGCAAGCTGCAACAGCAAGGGCAGCTCAGGCCCCTGAAGCTGAACCTAGAGTTAGTGATGAAGGAAGGTTTTTGTCAAACATACTCCGCGAAATCATTCCCCTCGTGTCTCAACAAACAGGCTCTGGAAGAAATCCTTCAGAGGAACAAGCAGCTCAGGATTCTTCATCACAGGTGGAAACTGATGCAGGGACATCACGAAGGCGGAATGGTTCAGATCCAAGCCCCCCTGATTCTAAACGCCAAAAGATGGAGTGA 2130 0.4671 MGSTGTDKMPGNNSTGSSETTIEIKIKTLDSQTYTLRVDKQMPVPALKERIASVTGVLSHRQRLICQGKVLKDDQLLSAYHVEDGHTLHLVSRQPDLPGFLPGHSGADPNSSTSHGHSSQISPGVVIETFNVPVQGDGVTPEFSRIVSAVLGSIGIPNFGSGVEGIDVREHDSQGFGRTSGSSGLSDSSHPQPEQTGLRYSSDRSRNTFVHPAAASLGSLQPPVIPDSLTTLSQFLSHISHEFDAIVREGGNNVQAAEAHRNEEMGSASSRLGSTAEALTSPASLAEVMLSTRRMMIEQAGECLLQLARHLENQANVTDHLMRSSIQSRALRTGVLFYNLGALFLELGRTTMTLRLGQSPSEAVVNGGPAVFISPSGPNHIMVQPLPFQPGANFGTVPIGTAQSNASLGSGLGSSFFPRRIDIQIRRGVSTATPNASQEERADTQSASVQRNQGEGPANQAASRRSDVAGAGEQGVRIVPIRTMVATVPGSLGRPPAEPSGNSIGVYYPVLGRFQQVSSGHGNSEQGSQPASQHHAVQQSSHENTLQRQNEDSARNGSSSTPTTSSNSRVVNINILAAGGAQNNQESERQLPNSVLQFIRTLFPGGEIHVEDLNLQGTNSGSTPEQAATARAAQAPEAEPRVSDEGRFLSNILREIIPLVSQQTGSGRNPSEEQAAQDSSSQVETDAGTSRRRNGSDPSPPDSKRQKME* 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3132 709 MobiDBLite consensus disorder prediction 429 474 - -
Amo01g3132 709 ProSiteProfiles Ubiquitin domain profile. 22 97 IPR000626 GO:0005515
Amo01g3132 709 MobiDBLite consensus disorder prediction 175 205 - -
Amo01g3132 709 MobiDBLite consensus disorder prediction 660 696 - -
Amo01g3132 709 MobiDBLite consensus disorder prediction 106 121 - -
Amo01g3132 709 MobiDBLite consensus disorder prediction 1 20 - -
Amo01g3132 709 MobiDBLite consensus disorder prediction 97 121 - -
Amo01g3132 709 MobiDBLite consensus disorder prediction 429 460 - -
Amo01g3132 709 MobiDBLite consensus disorder prediction 517 570 - -
Amo01g3132 709 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 1 709 - -
Amo01g3132 709 Pfam Ubiquitin family 24 94 IPR000626 GO:0005515
Amo01g3132 709 Gene3D - 15 99 - -
Amo01g3132 709 PANTHER SCYTHE PROTEIN UBIQUITIN-LIKE DOMAIN PROTEIN 1 709 - -
Amo01g3132 709 MobiDBLite consensus disorder prediction 171 205 - -
Amo01g3132 709 PRINTS Ubiquitin signature 32 52 IPR019956 -
Amo01g3132 709 PRINTS Ubiquitin signature 53 73 IPR019956 -
Amo01g3132 709 PRINTS Ubiquitin signature 74 95 IPR019956 -
Amo01g3132 709 SMART ubq_7 22 93 IPR000626 GO:0005515
Amo01g3132 709 CDD Ubl_ubiquitin_like 24 91 - -
Amo01g3132 709 MobiDBLite consensus disorder prediction 660 709 - -
Amo01g3132 709 SUPERFAMILY Ubiquitin-like 18 106 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3132 Amo-Chr1 102826735 102834016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3132 22 93 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 37.500 4.13e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3132 K23390 - gmx:100783070 996.882