Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3130 ATGACTGCAGCAGCCACCATGTGTGTTGAGGAAGCTGAGCAAGTTGAGCATCATGATCATCAAGATATGGAGAATACTAAGAAGGAGGACATGATTCATAACAAAAAGTGGCCTTTGCATTGTGATAATCATAATCTCTTGATGGACACCACCTCTTCTTTTGCATCTTCCACTGCAAACTCACTCCCTCTGGAAAGCATATGTGAGGAGACAGTGATTGCAGACAAGAAACAGAACGGTTCAAGCTTTGTCCCGGCTCTGCGCTCCGGCGAATGGTCTGATATCGGAGGCCGGCCTTACATGGAAGATACACACATATGCATTGGAGACATGGCAAAAAGATTTGGATATAATAACAACCTACTTTCTGAGGAAGCTGTTTCATTTTACGGTGTATTTGATGGACATGGAGGGAAGAGCGCGGCTCAATTCGTGCGCGATCATCTGCCTAGGATCATTGCTGAGGATGCAGGCTTTCCTTTGGAACTTGAGAAGGTTGTTACAAAGTCTTTTTTGGACACTGATGCAGAGCTTAAAACATACTCTCTTGAATCTTGCCTCTCTTCTGGAACCACTGCACTCACTGCAATTATATTCGGAAGGTCATTGCTTGTAGCCAATGCAGGGGACTGCAGGGCTGTGTTGTCACGCCATGGCGCGGCAATAGAAATGTCCAAGGATCACAGGCCTTACTGCATCAAAGAGAGAAAGCGAATCGAGTCCCTAGGTGGATTCATTGATGATGGCTACCTGAATGGTCAGTTGGGTGTTACTCGCGCTCTAGGCGACTGGCATCTTGAAGGAATGAAGGAAACAGGTGGAGGTGGTGGACCATTGAGTGCTGAGCCTGAACTCAAATTGATGACATTGACCAAAGAAGATGAATTCTTGATAATAGCAAGTGATGGAATTTGGGATGTTTTCCGGAGCCAAAATGCTGTGGATTTTGCTCGGAGGAGGCTTCAAGAACACAATGATGTGAAGCAATGTTGCAAGCAAATAGTAGAGGAAGCAATAAAGAGAGGAGCAACAGATAACTTAACGGTTGTGATGGTGTGTTTTCACTCAGATCCACCACCCCCTGTGGTTGTGGAAAGAGCAAGAGTTAGAAGAAGCATATCTGCTGAGGGACTGCATAACCTCAAATGCCTGCTACAAGGTTAG 1164 0.4562 MTAAATMCVEEAEQVEHHDHQDMENTKKEDMIHNKKWPLHCDNHNLLMDTTSSFASSTANSLPLESICEETVIADKKQNGSSFVPALRSGEWSDIGGRPYMEDTHICIGDMAKRFGYNNNLLSEEAVSFYGVFDGHGGKSAAQFVRDHLPRIIAEDAGFPLELEKVVTKSFLDTDAELKTYSLESCLSSGTTALTAIIFGRSLLVANAGDCRAVLSRHGAAIEMSKDHRPYCIKERKRIESLGGFIDDGYLNGQLGVTRALGDWHLEGMKETGGGGGPLSAEPELKLMTLTKEDEFLIIASDGIWDVFRSQNAVDFARRRLQEHNDVKQCCKQIVEEAIKRGATDNLTVVMVCFHSDPPPPVVVERARVRRSISAEGLHNLKCLLQG* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3130 387 ProSiteProfiles PPM-type phosphatase domain profile. 88 354 IPR001932 -
Amo01g3130 387 ProSitePatterns PPM-type phosphatase domain signature. 129 137 IPR000222 GO:0043169
Amo01g3130 387 SUPERFAMILY PP2C-like 80 355 IPR036457 -
Amo01g3130 387 MobiDBLite consensus disorder prediction 1 25 - -
Amo01g3130 387 PANTHER PROTEIN PHOSPHATASE 2C 27-RELATED 7 375 - -
Amo01g3130 387 MobiDBLite consensus disorder prediction 11 25 - -
Amo01g3130 387 Pfam Protein phosphatase 2C 100 346 IPR001932 -
Amo01g3130 387 CDD PP2Cc 88 354 IPR001932 -
Amo01g3130 387 Gene3D - 68 357 IPR036457 -
Amo01g3130 387 PANTHER PROTEIN PHOSPHATASE 2C 7 375 IPR015655 GO:0004722|GO:0006470
Amo01g3130 387 SMART PP2C_4 78 352 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3130 Amo-Chr1 102811303 102813244 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3130 48 387 PP2C-type Phosphatase Gene Family AT2G25620 56.941 1.76e-132 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Amo01g3130 PP2C 1.5e-70 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3130 K14803 - gmx:100782648 548.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g3130 01 102811303 102813244 Amo13g2274 13 38800158 38806246 PCT
Amo13g2274 13 38800158 38806246 Amo01g3130 01 102811303 102813244 PCT