Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3128 ATGGGTTCCGCCACCAGTAGACTAGACGGTTCTCGCCCTCCCACGGCGAGGCTCAACCGCAACAACACACGCTTCAGCCTCTCCTCTCTTCTCTGCGGTGCTTCCACCTCTCGCTCCACCTATCAGATGGAAGAACATCCATCTGAACTTCAGGTAGATTTAGCAACAGAACCTGATGGTGGAACTCAGGAAATCACTGAGGAATCATCTTTATCATGTACAGAAGCTAGAATCAGCTGCAGCCACCATGCTGAAGCCGCTACCTCATCCAATACAAGAACTGAGTCTCATCGGCATATTGGTATTGAAGGTTCTTCCATAAATGTTGCAGCAAGTAGTCAGAGGAAGTGCTTGTCTGAATGTAAGGAGCTAGTCCCTCCTCATCAGGTAAGTGCTGGTCATAGTGGTAATGAATCATATAGGGATAGTAGCAATACAGCTAGTACTTCTTTTGTAGAGCAACAATCTTCAGATCCAGTCTCTGTAAATGTTTCTGCTAACAAAGATGGAGTCAATAATGTTGATGATCCAGTGGTTAGTGGTGTATCTCAAATCTCTCATGAGACAGTGCATCCATGGAGTTCGAGCCCTCAGGAGAATGGATATTTTAGTTCTGGGGAAATTTCTGTTGAGAATGATGCATTAATGGCTACCCAGAGTCCTTCTTCGGATCCCGTTTCTCAAGTTTCCACTTTACCGGCACCTTCTCCTATGCCCGAAGATGAACCTCGCAGAGAGGCAATACCTTCAGGATTAGGTATTCTTGTGTCTAATCGGGAAAGAGTGCAGGGAAATGATAGTGTGCTTCAAGTTGATGTTGTCACAATATCCTCCAACATCTTGTCTGGCAGCACTGCTGATGCCAATGATCATGATACCGGAAGGAGTGGTAGAAGAATATTTTGGGATGCTTTTTCACGGCGTAGTTCTAGAAGGCTTGGCGACTCTCAAACAATTGTGTTCTCTGCTGGCGGTGCCGATGATCCTAGATCTCAAGATAGATGGCTTGTTGATCTTGGTGGGGATTTCTCCAACGATGGGTTTGGAGGTGCTTCTTCTGGATATGTGGGCAGTAGAATTCACAGATTTAATGAAAGAATGCGGCATTCAAGATCCGAGATCTGGGAAAGGCTTCGAGGTGGCCTTGATGATTTTGGTCGTTTGAATTCTTCATGTCCATCAGGACTTCATGCAGATGGTATGTGCTCATGTGAGTCTTTACCAACAGCTGAAGAATCTAGCACTCGAGCAAGTATTTCAAGAATTGTCATGCTGGCTGAAGCACTGTTTGAGGTTTTAGATGAAATCCATCGGCAACCTGTATCGCTTTCCCTATCCATGGTTTCTCTTCCCGCACCTGAATCAGTTGTCGACTCTTTCCCTCTTAAGTCTCACAAAAAGGTCGATGCAGCTGACGGTGGCAGTGATGCTGAACAATGTTACATATGTTTGGCGGAGTATGAAGAAGGGGACCAAATTCGAGTTCTTCCTTGCAACCATGAGTATCACATGTCGTGCGTTGATAAGTGGCTTAAAGAAATACATGGGTATGGTCATTACAACCAAAAACTCATCATTCTTCCTTATTTCATTCTTCCTCGTTCATTTTGTAACCAACAACCATTTTCTCTGCTTCATCCTTTTACAGCGTATGCCCTCTTTGTCGTGGCAATGTTTGTGGAGGGTTCACGGAGTCTTCTGCCAACTCAGTGCCATCTCATTGATATTGTTGTACATATGATGTAA 1746 0.4479 MGSATSRLDGSRPPTARLNRNNTRFSLSSLLCGASTSRSTYQMEEHPSELQVDLATEPDGGTQEITEESSLSCTEARISCSHHAEAATSSNTRTESHRHIGIEGSSINVAASSQRKCLSECKELVPPHQVSAGHSGNESYRDSSNTASTSFVEQQSSDPVSVNVSANKDGVNNVDDPVVSGVSQISHETVHPWSSSPQENGYFSSGEISVENDALMATQSPSSDPVSQVSTLPAPSPMPEDEPRREAIPSGLGILVSNRERVQGNDSVLQVDVVTISSNILSGSTADANDHDTGRSGRRIFWDAFSRRSSRRLGDSQTIVFSAGGADDPRSQDRWLVDLGGDFSNDGFGGASSGYVGSRIHRFNERMRHSRSEIWERLRGGLDDFGRLNSSCPSGLHADGMCSCESLPTAEESSTRASISRIVMLAEALFEVLDEIHRQPVSLSLSMVSLPAPESVVDSFPLKSHKKVDAADGGSDAEQCYICLAEYEEGDQIRVLPCNHEYHMSCVDKWLKEIHGYGHYNQKLIILPYFILPRSFCNQQPFSLLHPFTAYALFVVAMFVEGSRSLLPTQCHLIDIVVHMM* 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3128 581 MobiDBLite consensus disorder prediction 132 170 - -
Amo01g3128 581 MobiDBLite consensus disorder prediction 38 70 - -
Amo01g3128 581 Pfam RING-like zinc finger 479 507 IPR001841 -
Amo01g3128 581 ProSiteProfiles Zinc finger RING-type profile. 480 510 IPR001841 -
Amo01g3128 581 MobiDBLite consensus disorder prediction 217 234 - -
Amo01g3128 581 SUPERFAMILY RING/U-box 467 513 - -
Amo01g3128 581 MobiDBLite consensus disorder prediction 1 22 - -
Amo01g3128 581 MobiDBLite consensus disorder prediction 217 246 - -
Amo01g3128 581 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 516 - -
Amo01g3128 581 MobiDBLite consensus disorder prediction 127 175 - -
Amo01g3128 581 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 454 521 IPR013083 -
Amo01g3128 581 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 1 516 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3128 Amo-Chr1 102796943 102800771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3128 394 515 C3H Transcription Factor Family AT5G45290 54.074 3.53e-36 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3128 - - gmx:100783722 744.962