Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3123 ATGTCACTGACTGGTAAACCCCCTCCTGAGATCAGAATTGAAGGAGAGAATTGCCCTCGTGCGGTGGTGGAATGGTACCAATGTTCTGCGCCAAAGGATCGAAGACACGATTTTGACCTGAGCTTGAAGGCGAAGAAACACCTCGTTTCGTTGGGTTGGACCTTTTCTTATTGCGACAAGAAAACTCGCTGGGAACTTCGTTACAAATCCCCTTCTGGTAAGACCTATACTTCTCTCAGAACTGCATGCAAAGCCTGCATTGGAGAGAAAAAGAAAGATTCTTCATCTAGTTCCAATTCATTGCAAGGATCACAGCAATCTCAATCCCAATCTCTACCTGCTCAACAACCAACGAGTTCCAAGGTAACCGGTGGTAGGCCTCGGAAACGCAAGAAACCGAACGCAAGTATCCAATTTAGTAAGTCCTCGTTCTGGTCTCGTCGTGGCGGTGGCGGTGGCCGTCGTCGTCGTGATTCTGGTGAAAGTCCTAATGCCGCAAGAAAAGTAAGGAGGGCACGGAGTTCTTCTGATGATCCAAGAACGATTCTTTCTTGGCTGATTGACAACAATGTGGTGGCGCAGGAGGCGTGGGTTTTCTGCCGTGGAGGGAAAGATAATGAATTGGTGAAGAGAGGGAAGCTGTTTCGTTCTGGTATTTTCTGCCATTGTTGTGATTCTTTATGCACACTCTCTCAATTCCAGGGTCATGCCGGTTGCAAAGGTCAACCTCCCTCTGCTAGTATCTTCTTGGAACAAGATAAAAGGTCTTTGTTGGATTGCCAGAAACAAGCATTGATGATGATCAAGGCTAACAACAATGGGGATAATGATCATCATCATGAAAATGATTCCATTTGTTCAATTTGTCTCCAGGGGGGTTTCATTCTTCTCTGTGATCGCTGTCCGGCGTCATTCCACGCCGAATGTATTGGCCTTGATCATGTTCCCCCTGGTGATTGGTTCTGCCCTTCATGCTCTTGCAGAATTTGCAACCGTCCCAAATGCATAGAAGATTCTTGTAGAGAGGAAAGTCATTTGGCTAACAATTTTATAGCTTGTTATCAGTGTCAACGCAGATTCCACATTGGATGTTTAGCTTCTAGAGGCTTTGCTTTTCTGAACATGGAAACCGATTGGTTTTGCAATGAAGATTGTCAGAAGATATTTTTGACACTGAATAACATGTTGGGAAAACCAATTCCTGTGGGTGATGGTAATCTAACTTGGACATTGTTGACGAGCCTCAAGAAAAGCACTAATGACAATGATGACGATGGAACCATTACTGAAATGGAGAGCAAGCTAAATGTCGCACTTGGAATAATTCATGAGTGTTTTGAGCCCATCATAGATCCTGTATTTGGAAGAGACATTGCTGCAGATATTATGTTCAGCAGATATTCATGGCTGCCACGTATGAACTTTACAGGGTTCTACACTGTGATTCTAGAGAGGAATGATGAGGTGATCTCTGTTGCAAACACAAGGATTTATGGCCAAAAGGTTGCAGAAGTGCCGCTTGTCGCGACGAGTGAGCAGTATCGAAAGCAGGGAATGTGTCGAATTCTGATGGATCAGCTTGAGAAGCTGTTGGATAAGTTGGGTGTTGAGAGGTTGCTATTGCCTGCTGCTCCTTATTTAGTAGAAACTTGGACAAACTCATTTGGATTTGCAAAAATGACACACTCAGATCAGTATTACTGTGTAGGTTATCCTCTTGCAAATTTTCCAGACACAACATTGTGCCACAAATCATTGAAGCAACCTTTGATGCTGTATTGA 1782 0.4405 MSLTGKPPPEIRIEGENCPRAVVEWYQCSAPKDRRHDFDLSLKAKKHLVSLGWTFSYCDKKTRWELRYKSPSGKTYTSLRTACKACIGEKKKDSSSSSNSLQGSQQSQSQSLPAQQPTSSKVTGGRPRKRKKPNASIQFSKSSFWSRRGGGGGRRRRDSGESPNAARKVRRARSSSDDPRTILSWLIDNNVVAQEAWVFCRGGKDNELVKRGKLFRSGIFCHCCDSLCTLSQFQGHAGCKGQPPSASIFLEQDKRSLLDCQKQALMMIKANNNGDNDHHHENDSICSICLQGGFILLCDRCPASFHAECIGLDHVPPGDWFCPSCSCRICNRPKCIEDSCREESHLANNFIACYQCQRRFHIGCLASRGFAFLNMETDWFCNEDCQKIFLTLNNMLGKPIPVGDGNLTWTLLTSLKKSTNDNDDDGTITEMESKLNVALGIIHECFEPIIDPVFGRDIAADIMFSRYSWLPRMNFTGFYTVILERNDEVISVANTRIYGQKVAEVPLVATSEQYRKQGMCRILMDQLEKLLDKLGVERLLLPAAPYLVETWTNSFGFAKMTHSDQYYCVGYPLANFPDTTLCHKSLKQPLMLY* 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3123 593 SUPERFAMILY FYVE/PHD zinc finger 261 327 IPR011011 -
Amo01g3123 593 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 10 589 - -
Amo01g3123 593 MobiDBLite consensus disorder prediction 91 175 - -
Amo01g3123 593 MobiDBLite consensus disorder prediction 92 123 - -
Amo01g3123 593 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 462 574 IPR016181 -
Amo01g3123 593 Pfam Tify domain binding domain 212 264 IPR032308 -
Amo01g3123 593 PANTHER DUF724 DOMAIN-CONTAINING PROTEIN 4-RELATED 10 589 - -
Amo01g3123 593 CDD NAT_SF 481 541 - -
Amo01g3123 593 Pfam Acetyltransferase (GNAT) domain 475 560 IPR000182 GO:0016407
Amo01g3123 593 SMART PHD_3 327 386 IPR001965 -
Amo01g3123 593 SMART PHD_3 285 326 IPR001965 -
Amo01g3123 593 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 274 326 IPR013083 -
Amo01g3123 593 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 327 388 IPR013083 -
Amo01g3123 593 Pfam PHD-finger 285 327 IPR019787 -
Amo01g3123 593 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 426 578 IPR000182 GO:0016407
Amo01g3123 593 MobiDBLite consensus disorder prediction 151 175 - -
Amo01g3123 593 Gene3D - 464 573 - -
Amo01g3123 593 ProSiteProfiles Zinc finger PHD-type profile. 283 328 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3123 Amo-Chr1 102749873 102751683 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3123 162 534 PHD Transcription Factor Family AT5G58610 43.264 1.03e-91 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Amo01g3123 Acetyltransf_1 9.9e-05 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3123 - - aip:107608518 1028.85