Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3117 ATGGCTTTCCACGAGCACCATATGCAGCACGAGATAGCGTTTCAGCGCTTCACCGAGGAGCAAGAACTAACAGCAGAGAATAGGGACATGCAGCAGCAGAGGGCGGCGGGGGTGGTTGCGCCGCCGACGTGGCTCAACAACCCTAGCAGTCATCATCATCGACAGCAGCAGAATTTCCTGCACCAGCTGCAACCACCACCACCACCACCGGAGACAGCGACCACGACGGAGAAGAGCATGGATCGGAACACAAGTTTCGAATCGTCTGATGAATTGAGGGAATACAAAGCAGACATCTTAGGACACCCGCTGTACGACCAGCTTCTGTCGGCTCATGTTTCTTGCCTGAGAATCGCCACACCAGTTGACCAGCTTCCACGGATCGACGCGCAGTTGCAGCAGTCGCAGCGCGTCGTTGATAAGTACTCTGCCCTCGCAAACCCTGTCGTTGATGACAAGGAGCTCGATCACTTCATGACACATTATGTTCTGCTGCTATGTGCGTTCAAGGAACAGTTGCAGCAACATGTCCGTGTTCATGCCATGGAAGCAGTGATGGCTTGTTGGGATCTTGAGCAGTCTCTACAAAGCTTGACCGGTGTATCTCCTGGGGAAGGAACGGGAGCAACAATGTCGGACGACGAAGATGAGCAAGCGGAGAGCAACGGTGGCGGCGGCGGCGGCGGGGGGAACCTATACGAAGGAAGCTTTGACGGTGTTGATAGTCTTGGTTTTGGTCCTCTTGTGCCGACTGAGAGTGAAAGATCGTTGATGGAGCGAGTGAGGCATGAACTGAAGCATGAACTCAAACAGGGTTACAAGGAGAAGATCGTTGACATCCGTGAAGAGATTCTCCGCAAGAGAAGAGCTGGCAAGCTTCCTGGTGACACCACCTCCCTTCTCAAAGCTTGGTGGCAATCACATTCTAAATGGCCCTACCCTACTGAGGAAGACAAGGCCAGGCTGGTGCAGGAAACTGGATTGCAATTAAAGCAGATAAATAATTGGTTCATAAATCAAAGGAAAAGGAACTGGCATACTAACCCCTCTTCCTCTAGTAACTCTAAAACCAAGCGAAAGAGCAGTGCAGGTGAGAGCAGTAACCAAAGCTTCATGTGA 1119 0.5192 MAFHEHHMQHEIAFQRFTEEQELTAENRDMQQQRAAGVVAPPTWLNNPSSHHHRQQQNFLHQLQPPPPPPETATTTEKSMDRNTSFESSDELREYKADILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVVDKYSALANPVVDDKELDHFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGEGTGATMSDDEDEQAESNGGGGGGGGNLYEGSFDGVDSLGFGPLVPTESERSLMERVRHELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNPSSSSNSKTKRKSSAGESSNQSFM* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3117 372 Pfam KNOX2 domain 149 199 IPR005541 GO:0003677|GO:0005634
Amo01g3117 372 Pfam Homeobox KN domain 304 343 IPR008422 GO:0003677|GO:0006355
Amo01g3117 372 ProSiteProfiles ELK domain profile. 264 284 IPR005539 GO:0003677
Amo01g3117 372 SMART ELK_2 264 285 IPR005539 GO:0003677
Amo01g3117 372 MobiDBLite consensus disorder prediction 43 61 - -
Amo01g3117 372 Pfam ELK domain 264 285 IPR005539 GO:0003677
Amo01g3117 372 SMART HOX_1 286 351 IPR001356 GO:0003677
Amo01g3117 372 MobiDBLite consensus disorder prediction 341 372 - -
Amo01g3117 372 MobiDBLite consensus disorder prediction 199 233 - -
Amo01g3117 372 MobiDBLite consensus disorder prediction 41 88 - -
Amo01g3117 372 SMART KNOX1_2 93 137 IPR005540 GO:0003677|GO:0005634
Amo01g3117 372 Pfam KNOX1 domain 95 136 IPR005540 GO:0003677|GO:0005634
Amo01g3117 372 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 29 365 - -
Amo01g3117 372 CDD homeodomain 287 348 IPR001356 GO:0003677
Amo01g3117 372 Gene3D - 290 367 - -
Amo01g3117 372 ProSiteProfiles 'Homeobox' domain profile. 284 347 IPR001356 GO:0003677
Amo01g3117 372 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 29 365 - -
Amo01g3117 372 SMART KNOX2_2 145 200 IPR005541 GO:0003677|GO:0005634
Amo01g3117 372 SUPERFAMILY Homeodomain-like 286 351 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3117 Amo-Chr1 102570200 102574835 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3117 95 367 Homeobox Transcription Factor Family AT5G11060 81.949 2.89e-164 463
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Amo01g3117 KNOX2 1.4e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3117 - - gmx:100781997 570.852