Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3105 ATGCAAATAATGCTGCAAAATAGTCCTTCAAAATTTGAAATTAGTCTCTCCTTTAAAATAGGTGAAGGATTAATCACTGAAAAATATGGTTCTGGCCTATCAAACCCATTGTATCTTAAGCCTCCAGATAATACTGAATGGAGAGTAGATTGGACTAATCATGATGGTAGAACTTTGTTTAAAAAGGGTTGGAAAGAGTTTGTTGCATATTACTCTCTTGATCCTGCCCATTTGTTATGGTTTGAGTATAATATTGGAACTTCTCACATTGAAGTACACATATTTGATATGAGTTGCCTCCAAATATATTATCTTGCCAATGATCAGATCAAAGAGCAGCTGCCATGCAGTGGTCAACAGCCGATGAAAAGGCCAGAAGAACCAAAAACTAGAGATGTGGATAGCAGTCCCAATACCCAAAACATGACACTTAAAGAGGGACGGCAAAAGAAAAGATTGAATGAACCATTGACAAGAGAAGTCCGGGACCAACCAAGGAAAAAACTGAGAGCACTAGTGTCATCTGCTTTCAAAGGTAGACAGTTGGAAAATGACACACAAATCAAGGATGTGGAAAGAAGCTTCAATTCGCACGGTATTAAATCCAAAGAAAAAAACTATGAGATGCCAGTGTCTGTCAATCAAGATTCTAATGGCAAAAGGAATAGAAGAAGAAAAGATTCTGAATCTCCTGTTCGGCCCTGTCCTACAAGACTTGAATCTCTGAAAGAAGCTAAGAAGTTTAAGTGGGAAAAGCCCTCTTTCATCATCAAGATAACGCAGCGGTCTCAAACGAGAGCACCATGTTACTTTTCAACTAAAATTTTCAGAAAGTATTTTGAAAATAACCCCCAAAATGCAAATATAAGGTTTGGAAAGAAGTTGTTCCCTACTAAGTTGATCTGTAGGCCATCATCATGTGATGCCTTTATCTCTGCTGGTTGGAACCTTTTTGCTCGAGCTAGTAAATTACAAGCTGGAGATGATATTTGTTTAAGCTCATCAATAGAAAAGATCTGGTGTTTGATGTTCATATTTGTCGTCGACAACGCCACGGTAAGTCAATTGCTTAGAAATTCTTAA 1083 0.3767 MQIMLQNSPSKFEISLSFKIGEGLITEKYGSGLSNPLYLKPPDNTEWRVDWTNHDGRTLFKKGWKEFVAYYSLDPAHLLWFEYNIGTSHIEVHIFDMSCLQIYYLANDQIKEQLPCSGQQPMKRPEEPKTRDVDSSPNTQNMTLKEGRQKKRLNEPLTREVRDQPRKKLRALVSSAFKGRQLENDTQIKDVERSFNSHGIKSKEKNYEMPVSVNQDSNGKRNRRRKDSESPVRPCPTRLESLKEAKKFKWEKPSFIIKITQRSQTRAPCYFSTKIFRKYFENNPQNANIRFGKKLFPTKLICRPSSCDAFISAGWNLFARASKLQAGDDICLSSSIEKIWCLMFIFVVDNATVSQLLRNS* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3105 360 MobiDBLite consensus disorder prediction 218 236 - -
Amo01g3105 360 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 26 342 - -
Amo01g3105 360 Gene3D - 237 349 IPR015300 -
Amo01g3105 360 Gene3D - 1 99 IPR015300 -
Amo01g3105 360 SUPERFAMILY DNA-binding pseudobarrel domain 27 98 IPR015300 -
Amo01g3105 360 MobiDBLite consensus disorder prediction 116 162 - -
Amo01g3105 360 MobiDBLite consensus disorder prediction 197 236 - -
Amo01g3105 360 MobiDBLite consensus disorder prediction 145 162 - -
Amo01g3105 360 ProSiteProfiles B3 DNA-binding domain profile. 37 98 IPR003340 GO:0003677
Amo01g3105 360 CDD B3_DNA 33 96 IPR003340 GO:0003677
Amo01g3105 360 SUPERFAMILY DNA-binding pseudobarrel domain 252 346 IPR015300 -
Amo01g3105 360 PANTHER B3 DOMAIN-CONTAINING 26 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3105 Amo-Chr1 102433940 102435279 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3105 25 104 B3 DNA Binding Superfamily AT3G18990 37.500 5.99e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3105 - - ahf:112717085 515.383