Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3097 ATGGGTTATAAGTTTATAAAGAGTTTTCTTAGAAGCTTCGGGAATAATGGTGTTGCTTCAAGATTTAATAACAATTTTGTGGTGGATGAGTTCACAGTTGCAGCCACCATTTGGGTTGATTTTGATGATGTGGATTCAATCAGAGCCAAAGTTTCTTATGCCAAGGAAAAGGGACTTCTTGGCTACAGTGTGTTCCAACTTGCCAACGATGACAATTGGGTCCTTTCAAAGGCAGCTCAAGAAGTAGATGAAGATCATCATAAGAGGAGGTTGTTGATAATTGTTCTGCTATCAACAGTAACTGTCATAATTCTGTTGGGAATAGTGTTTTGCTACTGCCACAGTGGAACCGCAGCCACCATTACAAAAGCATTATACAAAATAAGGAAATGTTTATCAGGAGCTGAACAAGATCATGTAGAAGGGAATGGTTCTGACTTGACTGCATTCAGTTATCTCACAATCAAAATGGCAACAAATAACTTCTCAAGAGATAATAAACTTGGAGAGGGTGGATTTGGCACGGTTTATAAGGGAAAATTACGAAAGGGGCAGGAGATAGCTGTGAAAAGGCTCTCAGAAAGCTCGAATCAAGGCCTAGAAGAGTTCAAAAATGAAATCACGCTTACAGCAAGATTACAACATGTGAATTTGGTTAGACTTCTGGGTTACTGCACAAAAAGGGATGAGAAGATTTTGATCTATGAATACCTACCAAACAAAAGCTTAGATCATTTTCTCTTTGATCCAAGGAAATCAATTCTTTTAGACTGGAGCAAGCGTGCCAACATCATTGAAGGGGTTACTCAAGGCCTTCTTTATCTCCAAGAGTACTCAAATTTCACCATAATCCACCGAGATCTCAAAGCCAGTAATATTTTATTAGACCATAATATGAATCCCAAGATATCAGATTTTGGGATGGCAAGAATTTTCAGGAAATATGACCTTGAAGCAAACACAAGCAGGATTGTTGGGACATACGGTTATGTACCTCCTGAGTATGTGAGAAAAGGCATATACTCGACGAAGTACGATGTTTATAGCTTTGGAGTTCTTCTGTTGCAAATCATAAGTGGGAAGAGGACTTCATGTTACTATGGACCACATGAAAATATGAACCTGTTGGAATATGCATATGAGCTGTGGATGGAGGGAAGAGGTGTGGAATTTTTAGACCCTTCATTAGATGATACAACATCAGCGTGTAAACTCATGAGATGCATGCAAGTAGCTCTTTTGTGTGTTCAAGAGAACTCTGCAGATAGACCTTCCATGTTGGAAGTTGATTCAATTCTCAAGAATGAAACTGCAGCTATTGGTAGTCCCAAAATGCCTGGTTTTTCAGTGAAGAAACATGAAGATGATGAGAAAGAAAGATCCATAAAATATGTTTCAATTAATGATGTTACAATTTCTCAAATGATACCAAGATGA 1437 0.3827 MGYKFIKSFLRSFGNNGVASRFNNNFVVDEFTVAATIWVDFDDVDSIRAKVSYAKEKGLLGYSVFQLANDDNWVLSKAAQEVDEDHHKRRLLIIVLLSTVTVIILLGIVFCYCHSGTAATITKALYKIRKCLSGAEQDHVEGNGSDLTAFSYLTIKMATNNFSRDNKLGEGGFGTVYKGKLRKGQEIAVKRLSESSNQGLEEFKNEITLTARLQHVNLVRLLGYCTKRDEKILIYEYLPNKSLDHFLFDPRKSILLDWSKRANIIEGVTQGLLYLQEYSNFTIIHRDLKASNILLDHNMNPKISDFGMARIFRKYDLEANTSRIVGTYGYVPPEYVRKGIYSTKYDVYSFGVLLLQIISGKRTSCYYGPHENMNLLEYAYELWMEGRGVEFLDPSLDDTTSACKLMRCMQVALLCVQENSADRPSMLEVDSILKNETAAIGSPKMPGFSVKKHEDDEKERSIKYVSINDVTISQMIPR* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3097 478 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 1 474 - -
Amo01g3097 478 CDD STKc_IRAK 168 435 - -
Amo01g3097 478 SUPERFAMILY Protein kinase-like (PK-like) 146 444 IPR011009 -
Amo01g3097 478 ProSitePatterns Serine/Threonine protein kinases active-site signature. 283 295 IPR008271 GO:0004672|GO:0006468
Amo01g3097 478 Gene3D Transferase(Phosphotransferase) domain 1 238 443 - -
Amo01g3097 478 SMART serkin_6 162 438 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g3097 478 ProSiteProfiles Protein kinase domain profile. 162 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g3097 478 Gene3D Glycosidases 43 71 - -
Amo01g3097 478 ProSitePatterns Protein kinases ATP-binding region signature. 168 190 IPR017441 GO:0005524
Amo01g3097 478 Gene3D Phosphorylase Kinase; domain 1 124 237 - -
Amo01g3097 478 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 1 474 - -
Amo01g3097 478 Pfam Protein kinase domain 163 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g3097 478 Gene3D - 3 42 IPR029070 -
Amo01g3097 478 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 1 86 IPR001223 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3097 Amo-Chr1 102369623 102372284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3097 150 478 Receptor kinase-like Gene Family AT4G11530 53.254 6.03e-119 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo01g3097 Pkinase 5.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3097 - - aprc:113847882 754.977