Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3088 ATGCAACCTTGTAGCAGAGAAATGCAAAGCCTCAACTCCCTCTTCAACAATCAGCAGCAGATCCAAATGGACCCTGCTACTTCTCAAGAAGACGATTTCATCAAGCAGATGCTTTCTACTATCCCTCCTCCACCACCTCCTTCATGGAACCTTGACCATACTCCTCCTAACCCTAAGCCTTACTGGCTTGACAACGACAATGTCGCTTTCCCTAACTACGACGARCCTTCCACTCTCGCTTCCAAGTTCCGTAACCACCAGATCACCGCTAKTTCCTCCTCCAAGGCCGCCGCCGCCGCTCTCTTGCTCCAACAGCAGCTTCTCATGACCAGAGGCCTCTCCGGTGCTGATTCCGCCATCCTTCARCACATGTTTGACTCTTCCCAAAACGACGTCGTCGACGCCTCCTCCTCCTCCTTCAAATCTCCCAATCCAACCTCTGCCGACGGTTCCGTTCAAGCTCTGTACGACGGTTTCACCGGATCTCTCCAGGGCGCTGCTCTAGCATCCAATCAGACTCACCATTTTCAGCATCCACAGGTTCAGACAAGTTCAAATCCGAATCAGATGCAGGGGCAGGGGCAGGGAACGAGCCAAGGTGGGAACCCGAACCCGAACCCGAACCCGGGTCAGCCGAAACAGAGGGTTAGGGCGAGGAGAGGTCAAGCCACGGACCCACACAGCATCGCTGAGAGGTTGCGAAGGGAAAGGATCGCGGAGAGAATGAAGGCCTTGCAGGAATTGGTTCCCAACGCCAACAAGACAGACAAGGCCTCCATGCTAGATGAGATCATCGACTATGTGAAATTCCTACAGCTCCAAGTCAAGGTTCTTAGCATGAGCAGATTGGGAGGTGCAGCTGCTGTTGCTCCGCTTGTTGCTGATATAAACTCTGAGGGAGGCGGTGACTGCGTCCAAACCAACGGCAACCAAACGGCAGGGGCTTCATCCTCCAACGACAGCCTCACCATGACGGAGCAACAGGTGGCTAAGCTCATGGAGGAGGACATGGGTTCCGCCATGCAGTACCTCCAGGGTAAGGGCCTCTGCCTCATGCCAATCTCCCTAGCCACCGCCATCTCCACCGCCACTGCCACGTGTCACCCCAGGAACCCCATCATGAACCCCACTGATGGACCRTCCTCTCCCGGCATGTCWGTCCTCACGGTGCAGTCTGCTAACGGCGACGCCGTCAAGGACGCCACCTCCGTTTCCAAGCCCTAA 1224 0.5531 MQPCSREMQSLNSLFNNQQQIQMDPATSQEDDFIKQMLSTIPPPPPPSWNLDHTPPNPKPYWLDNDNVAFPNYDEPSTLASKFRNHQITAXSSSKAAAAALLLQQQLLMTRGLSGADSAILQHMFDSSQNDVVDASSSSFKSPNPTSADGSVQALYDGFTGSLQGAALASNQTHHFQHPQVQTSSNPNQMQGQGQGTSQGGNPNPNPNPGQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADINSEGGGDCVQTNGNQTAGASSSNDSLTMTEQQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATATCHPRNPIMNPTDGPSSPGMSVLTVQSANGDAVKDATSVSKP* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3088 407 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 220 282 IPR036638 GO:0046983
Amo01g3088 407 SMART finulus 228 277 IPR011598 GO:0046983
Amo01g3088 407 MobiDBLite consensus disorder prediction 218 236 - -
Amo01g3088 407 MobiDBLite consensus disorder prediction 37 60 - -
Amo01g3088 407 MobiDBLite consensus disorder prediction 133 153 - -
Amo01g3088 407 MobiDBLite consensus disorder prediction 370 407 - -
Amo01g3088 407 MobiDBLite consensus disorder prediction 166 236 - -
Amo01g3088 407 MobiDBLite consensus disorder prediction 166 204 - -
Amo01g3088 407 PANTHER TRANSCRIPTION FACTOR BHLH69 25 373 - -
Amo01g3088 407 MobiDBLite consensus disorder prediction 39 54 - -
Amo01g3088 407 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 25 373 - -
Amo01g3088 407 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 222 271 IPR011598 GO:0046983
Amo01g3088 407 Pfam Helix-loop-helix DNA-binding domain 227 272 IPR011598 GO:0046983
Amo01g3088 407 Gene3D - 217 279 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3088 Amo-Chr1 102301086 102305133 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3088 209 406 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 66.368 1.10e-90 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo01g3088 HLH 1.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3088 - - jre:109000831 385.185