LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo01g3086	ATGGGAGATAGACGGAGTGAGGGTTCAGCGTCGACGCTGCTGCAGGGGAAGTATGAGTTAGGGAGGCTTCTTGGAACGGGGACGTTCGCGAAGGTGTACCACGCGCGGAACGTGGAAACSGGGAAGAGRGTGGCGATGAAAGTGGTTGGGAAAGAGAAGGTGATAAAGGTTGGGATGATGGAGCAGATTAAGAGAGAGATCTCGGTCATGAAGATGATGAAGCATCCTCATATCGTTGCGCTCCACGAAGTAATGGCRTCCAAATCCAAGATCTACATCGCCATGGAGCTCGTCCGSGGCGGCGAGCTCTTCAACAAAATTGCCACAAGGGGACGCATGAGGGAGGACCTTGCGAGGCTCTACTTRCACCAGCTTATCTCCGCCGTCGATTTCTGCCACAGCCGTGGCGTCTACCACCGCGATCTCAAGCCGGAGAATCTCCTCCTTGACCACAACGGCAACCTCAAGGTCTCTGACTTCGGACTCAGCACTTTCTCCGAGCATCTCCGCCAGGACGGCTTYTTGCACACAACTTGCGGCACTCCGGCATACGTCTCGCCGGAGGTGCTCGSGCGGAAGGGATACGACGGCGCCAAGGCCGATATATGGTCCTGCGGCGTCATCCTGTTTGTGCTTCTTGCAGGTTGCTTGCCTTTTCAGGACGATAACCTTGTTGCGATGTACAAGAAGATTTACAGAGGAGATTTCAYGTGTCCGCCGTGGTTCTCCGGCGATGCAAGGAGGCTCATCACCAAGCTGCTCGATCCGAARCCGAATTCTCGCATCACCATTTCGAAAATCATGGAGTCACCGTGGTTCAAGAAACCTGTTCCGAAGAACATGCTACGGGGGATGAAGGAMGAAGARGAAGAGGAGAAGGAGAAAGASATAGAGGAGAAGATGAAGCAGCCATCGACGATGAACGCGTTTCACATAATATCGTTATCSGAAGGYTTTGATTTGTCGAGGTTGTTCGAGGAGAAGAAGAGGGAGGAGAGGGAGGAGATGAGGTTTGCGACGGCGGGGACGGCGAGCAGCGTGATATCTCGACTGGAGGAGGTGGCGAAGGCGGTGAAGTTCGACGTGAAGAGGAYCAGCGATGAGACGAAGGTGAGGCTGCAGGGGCAGCAGAGAGGAAGGAAGGGGAAGCTGGCAATTGCGGCGGATATATACGCCGTGACGCCGTCYTTCCTGGTGGTGGAGGTGAAGAAYGARAACGGTGACACTTTGGAGTACAACCAGTTCTGCAGCAAGGAGCTTCGCCCTGCACTCAAGGATATCTTCTGGACTTCCCCACCTGAGAATACCACACCTGCTTAA	1320	0.5356	MGDRRSEGSASTLLQGKYELGRLLGTGTFAKVYHARNVETGKRVAMKVVGKEKVIKVGMMEQIKREISVMKMMKHPHIVALHEVMASKSKIYIAMELVRGGELFNKIATRGRMREDLARLYLHQLISAVDFCHSRGVYHRDLKPENLLLDHNGNLKVSDFGLSTFSEHLRQDGFLHTTCGTPAYVSPEVLXRKGYDGAKADIWSCGVILFVLLAGCLPFQDDNLVAMYKKIYRGDFXCPPWFSGDARRLITKLLDPKPNSRITISKIMESPWFKKPVPKNMLRGMKXEEEEEKEKXIEEKMKQPSTMNAFHIISLSEGFDLSRLFEEKKREEREEMRFATAGTASSVISRLEEVAKAVKFDVKRXSDETKVRLQGQQRGRKGKLAIAADIYAVTPSFLVVEVKNENGDTLEYNQFCSKELRPALKDIFWTSPPENTTPA*	440

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo01g3086	439	Coils	Coil	297	299	-	-
	Amo01g3086	439	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	137	149	IPR008271	GO:0004672\|GO:0006468
	Amo01g3086	439	PANTHER	NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE	10	437	-	-
	Amo01g3086	439	SUPERFAMILY	Protein kinase-like (PK-like)	15	281	IPR011009	-
	Amo01g3086	439	CDD	STKc_SnRK3	17	272	-	-
	Amo01g3086	439	Coils	Coil	288	295	-	-
	Amo01g3086	439	Gene3D	Phosphorylase Kinase; domain 1	15	99	-	-
	Amo01g3086	439	Pfam	Protein kinase domain	18	273	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Amo01g3086	439	ProSitePatterns	Protein kinases ATP-binding region signature.	24	51	IPR017441	GO:0005524
	Amo01g3086	439	Coils	Coil	279	286	-	-
	Amo01g3086	439	SMART	serkin_6	18	273	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Amo01g3086	439	Pfam	NAF domain	304	363	IPR004041	GO:0007165
	Amo01g3086	439	ProSiteProfiles	Protein kinase domain profile.	18	273	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Amo01g3086	439	Gene3D	Transferase(Phosphotransferase) domain 1	100	277	-	-
	Amo01g3086	439	PANTHER	-	10	437	-	-
	Amo01g3086	439	CDD	CIPK_C	308	425	-	-
	Amo01g3086	439	Gene3D	Kinase associated domain 1, KA1	301	430	-	-
	Amo01g3086	439	ProSiteProfiles	NAF domain profile.	302	326	IPR018451	GO:0007165

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo01g3086	Amo-Chr1	102272352	102274365	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo01g3086	8	433	CBL-interacting serine-threonine protein kinases	AT4G30960	71.860	0.0	608

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CAMKL-CHK1	Amo01g3086		Pkinase	3.7e-73	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo01g3086	-		K07198	gmx:547644	675.241