Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3080 ATGGGTTTGGGAGTGATTGGCACTGTTCTAATTTTGGGACTCTTGTTCAAGCATTTGGCTTCTCAGCAACCAAACACTGATGAGTTCTATGTGTCTGAGTTCTTGAAGAAAATGGTTTCCAATTCTTCTTCTTTTTCCTCCTACAATTTCTCAGCTTCAGTGTGTTCATGGCAAGGAGTTTTCTGTGACAACAACAAAGAACATGTTGTTGAGTTAAACTTTTCAGGTTTAGGCCTCTCTGGAACTATTCCTGATAACACCATAGGCAAGCTGAGCAAGCTTCAAACTTTGGATCTTAGCTGCAACAAGATCACAACTTTGCCTTCAGATTTTTGGAGTTTAAGCTCTATCAAGAGCCTCAACCTCTCCACCAATCAGATTTCAGGTTCATTGACCAACAACATTGGCAARTTTGGTATGCTTGAAACCATTGACTTGTCAAGCAACAACTTCACTGAAGAAATWCCAGAAGCTATTGGATCCCTTATGAGTTTGAGAATCCTCAAACTTGACCATAACAAATTCTCAAGAAGCATTCCTTCTGGGATTCTCAAGTGCCAGTCCCTGGTTTCAATTGATCTCTCATCAAATCAATTGAATGGAACACTTCCAAATGGTTTTGGTGCTGCTTTTCCCAAGCTCAAGAACTTGAACCTTGCTGCCAATGATATAGATGGCCGAATCTTGGATATTTCAGGTTTCAATTCCATTTTAAGTCTCAACATATCTGGAAATTCCTTTCAGGGTTCTATCATGGGTGTGTTTCAGGAAAAGTTGGAGGTATTGGACCTAAGCAGAAACCAATTTCAAGGCCACATTTCACAGAACTTGTTGAGTTTGAGTGAGTCCTTGTTGAATCTAAAGCACCTCAATCTTGCACACAACAGATTRTCCAAACAGAAATTCCCAACAAAGATTGAAAAGCTCCAAGGATTGGAGTATCTGAACTTGTCCAAAACCAATCTTGTAGGCCTAATCCCTGATGAAATCTCAAAACTGAGTAATCTCAATGTTCTTGATCTGTCTATGAATCATCTTGCTGGTAAAGTTCCAATTTTGAGGAACAAACACCTCCAAATTCTTGACCTTTCAAACAACACCTTGAGTGGAACAATCCCTTTGTCTGTCTTGGGGAAACTACCATTCATGGAGAGATACAACTTCTCTTACAATAACTTAACACTGTGTGCTTCAGACATTCACCCTGATGTTCTTGAATCAGCATTCTTTGGATCAGTGAACAGTTGTCCAATTGCTGCAGACCCACATTTCTTCAGGAGAAAGAACAATGGACACAACAAGGGAATGAAGCTAGCATTGGTGTTAACCTTCTCAATGATCTTCATGCTTGCTGGCCTGTTGTTCTTAGCATTCGGCTGCCGAAGGAAYTCGAAAATGTGGCAAGTTAAACAAACTTCATACAAAGAAGAACAGAACATTTCCGGGCCTTTCTCATTCCAGACTGATTCAACAACCTGGGTGGCTGATGTTAAGCAGGCAACATCAGTTCCGGTSGTAATCTTTGAGAAGCCTTTGTTGAACATTACATTTGCAGACTTACTGGCTGCAACTTCAAATTTCGACCGAGGTACTCTTTTGGCCGAAGGAAAATTCGGTCCGGTCTATAGAGGCTTTCTTCCTGGTGGTATTCATGTGGCAGTTAAAGTTTTGGTGGTTGGTTCTACATTGACAGATCAAGAAGTGGCTAGAGAGCTTGAGTTTCTTGGCAGAATCAAGCATCCCAARCTTGTTCCTTTAACTGGATATTGTAATGGAAACRTGCAAAATCTGCTATATGACTTGCCACTTGGTGTGCAAAGCACTGATGATTGGAGCACAGATACATGGGATGAATCTGACAACAATGGAATTCAGAATGCTGGCTCTGAAGGATTGCTCACAACTTGGAGATTTCGTCACAAAATCGCCCTTGGAACCGCTCGAGCTCTCGCTTTCTTGCACCATGGATGCTCTCCTCCAATCATTCATAGAGCAGTCAAGGCCAGCAGTGTTTATTTGGACTWTGARCTCGAGCCCAGGCTGTCTGATTTCGGCCTGGCTAAGATCTTTGGAAGCGGCTTGGACGAGGAGATTGCTCTTGGTTCCTCTGGTTATGTTCCGCCGGAGTTTTCRCAACAAGAATTCGAGTCACCAACCACGAAATCTGATCTAGTAACCGGAAAGAAGCCGGRCGGAGATGKTTACCCTGATGACAAGGAATCAACTTTGGTTAGCTGGGTGAGAGGACTAGTTAGAAAGAATCAAGCTTCAATAGCAATTGATCCAAAGATTAGGGACACAGGACTAGATGAACAAATGGAGGAGGCTCTCAAGATTGGTTATCTTTGCACTGCTGACTTGCCGGCCAAGCGACCAACAATGCAGCAGATTGTTGGACTTCTAAAAGACATTGAACCTATTGCTTCTAATTAG 2433 0.4196 MGLGVIGTVLILGLLFKHLASQQPNTDEFYVSEFLKKMVSNSSSFSSYNFSASVCSWQGVFCDNNKEHVVELNFSGLGLSGTIPDNTIGKLSKLQTLDLSCNKITTLPSDFWSLSSIKSLNLSTNQISGSLTNNIGKFGMLETIDLSSNNFTEEIPEAIGSLMSLRILKLDHNKFSRSIPSGILKCQSLVSIDLSSNQLNGTLPNGFGAAFPKLKNLNLAANDIDGRILDISGFNSILSLNISGNSFQGSIMGVFQEKLEVLDLSRNQFQGHISQNLLSLSESLLNLKHLNLAHNRLSKQKFPTKIEKLQGLEYLNLSKTNLVGLIPDEISKLSNLNVLDLSMNHLAGKVPILRNKHLQILDLSNNTLSGTIPLSVLGKLPFMERYNFSYNNLTLCASDIHPDVLESAFFGSVNSCPIAADPHFFRRKNNGHNKGMKLALVLTFSMIFMLAGLLFLAFGCRRNSKMWQVKQTSYKEEQNISGPFSFQTDSTTWVADVKQATSVPVVIFEKPLLNITFADLLAATSNFDRGTLLAEGKFGPVYRGFLPGGIHVAVKVLVVGSTLTDQEVARELEFLGRIKHPKLVPLTGYCNGNXQNLLYDLPLGVQSTDDWSTDTWDESDNNGIQNAGSEGLLTTWRFRHKIALGTARALAFLHHGCSPPIIHRAVKASSVYLDXELEPRLSDFGLAKIFGSGLDEEIALGSSGYVPPEFSQQEFESPTTKSDLVTGKKPXGDXYPDDKESTLVSWVRGLVRKNQASIAIDPKIRDTGLDEQMEEALKIGYLCTADLPAKRPTMQQIVGLLKDIEPIASN* 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3080 810 PANTHER CONCANAVALIN A-LIKE LECTIN/GLUCANASE DOMAIN-CONTAINING PROTEIN-RELATED 1 277 - -
Amo01g3080 810 ProSiteProfiles Leucine-rich repeat profile. 357 378 IPR001611 GO:0005515
Amo01g3080 810 SUPERFAMILY L domain-like 48 398 - -
Amo01g3080 810 PRINTS Leucine-rich repeat signature 333 346 - -
Amo01g3080 810 PRINTS Leucine-rich repeat signature 189 202 - -
Amo01g3080 810 Gene3D Ribonuclease Inhibitor 30 136 IPR032675 -
Amo01g3080 810 Gene3D Transferase(Phosphotransferase) domain 1 625 809 - -
Amo01g3080 810 Gene3D Ribonuclease Inhibitor 303 401 IPR032675 -
Amo01g3080 810 Pfam Leucine Rich repeat 355 370 IPR001611 GO:0005515
Amo01g3080 810 Pfam Protein kinase domain 531 713 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g3080 810 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 1 277 - -
Amo01g3080 810 MobiDBLite consensus disorder prediction 709 724 - -
Amo01g3080 810 Gene3D Ribonuclease Inhibitor 211 302 IPR032675 -
Amo01g3080 810 SMART LRR_sd22_2 355 376 - -
Amo01g3080 810 SMART LRR_sd22_2 284 311 - -
Amo01g3080 810 SMART LRR_sd22_2 186 219 - -
Amo01g3080 810 SMART LRR_sd22_2 91 122 - -
Amo01g3080 810 Pfam Leucine rich repeat 82 127 IPR001611 GO:0005515
Amo01g3080 810 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 284 806 - -
Amo01g3080 810 PANTHER CONCANAVALIN A-LIKE LECTIN/GLUCANASE DOMAIN-CONTAINING PROTEIN-RELATED 284 806 - -
Amo01g3080 810 MobiDBLite consensus disorder prediction 709 737 - -
Amo01g3080 810 SUPERFAMILY Protein kinase-like (PK-like) 504 801 IPR011009 -
Amo01g3080 810 SMART LRR_typ_2 91 113 IPR003591 -
Amo01g3080 810 SMART LRR_typ_2 257 280 IPR003591 -
Amo01g3080 810 SMART LRR_typ_2 162 186 IPR003591 -
Amo01g3080 810 SMART LRR_typ_2 333 355 IPR003591 -
Amo01g3080 810 SMART LRR_typ_2 284 309 IPR003591 -
Amo01g3080 810 SMART LRR_typ_2 114 138 IPR003591 -
Amo01g3080 810 Gene3D Ribonuclease Inhibitor 137 210 IPR032675 -
Amo01g3080 810 ProSiteProfiles Leucine-rich repeat profile. 93 114 IPR001611 GO:0005515
Amo01g3080 810 Gene3D Phosphorylase Kinase; domain 1 487 600 - -
Amo01g3080 810 ProSiteProfiles Protein kinase domain profile. 527 808 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3080 Amo-Chr1 102158568 102161204 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3080 65 805 Receptor kinase-like Gene Family AT4G39400 34.065 2.69e-99 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Amo01g3080 Pkinase 1.7e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3080 - - adu:107459185 1491.48