Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3078 ATGCAACCTTGTAGCAGAGAAATGCAAAGCCTCAACTCCCTCTTCAACAATCAGCAGCAGATCCAAATGGACCCTGCTACTTCTCAAGAAGACGATTTCATCAAGCAGATGCTTTCTACTATCCCTCCTCCACCACCTCCTTCATGGAACCTTGACCATACTCCTCCTAACCCTAAGCCTTACTGGCTTGACAACGACAATGTCGCTTTCCCTAACTACGACGARCCTTCCACTCTCGCTTCCAAGTTCCGTAACCACCAGATCACCGCTAKTTCCTCCTCCAAGGCCGCCGCCGCCGCTCTCTTGCTCCAACAGCAGCTTCTCATGACCAGAGGCCTCTCCGGTGCTGATTCCGCCATCCTTCARCACATGTTTGACTCTTCCCAAAACGACGTCGTCGACGCCTCCTCCTCCTCCTTCAAATCTCCCAATCCAAGCTCCGCCGACGGTTCCGTTCAAGCTCTGTACGACGGTTTCACCGGATCTCTCCAGGGCGCTGCTCTAGCATCCAATCAGACTCACCATTTTCAGCATCCACAGGTTCAGACAAGTTCAAATCCGAATCAGATGCAGGGGCAGGGGCAGGGAACGAGCCAAGGTGGGAACCCGAACCCGAACCCGGGTCAGCCGAAACAGAGGGTTAGGGCGAGGAGAGGTCAAGCCACGGACCCACACAGCATCGCTGAGAGGTTGCGAAGGGAAAGGATCGCGGAGAGAATGAAGGCCTTGCAGGAATTGGTTCCCAACGCCAACAAGACAGACAAGGCCTCCATGCTAGATGAGATCATCGACTATGTGAAATTCCTACAGCTCCAAGTCAAGGTTCTTAGCATGAGCAGATTGGGAGGTGCAGCTGCTGTTGCTCCGCTTGTTGCTGATATAAACTCCGAGGGAGGCGGTGACTGCGTCCAAACCAACGGCAACCAAACGGCAGGGGCTTCATCCTCCAACGACAGCCTCACCATGACGGAGCAACAGGTGGCTAAGCTCATGGAGGAGGACATGGGTTCCGCCATGCAGTACCTCCAGGGTAAGGGCCTCTGCCTCATGCCAATCTCCCTAGCCACCGCCATTTCCACCGCCACTGCCACGTGTCACCCCAGGAACCCCATCATGAACCCCACTGATGGACCRTCCTCTCCCGGCATGTCSGTCCTCACGGTGCAGTCTGCTAACGGCGACGCCGTCAAGGACGCCACCTCCGTTTCCAAGCCCTAA 1218 0.5534 MQPCSREMQSLNSLFNNQQQIQMDPATSQEDDFIKQMLSTIPPPPPPSWNLDHTPPNPKPYWLDNDNVAFPNYDEPSTLASKFRNHQITAXSSSKAAAAALLLQQQLLMTRGLSGADSAILQHMFDSSQNDVVDASSSSFKSPNPSSADGSVQALYDGFTGSLQGAALASNQTHHFQHPQVQTSSNPNQMQGQGQGTSQGGNPNPNPGQPKQRVRARRGQATDPHSIAERLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGAAAVAPLVADINSEGGGDCVQTNGNQTAGASSSNDSLTMTEQQVAKLMEEDMGSAMQYLQGKGLCLMPISLATAISTATATCHPRNPIMNPTDGPSSPGMSVLTVQSANGDAVKDATSVSKP* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3078 405 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 220 269 IPR011598 GO:0046983
Amo01g3078 405 MobiDBLite consensus disorder prediction 368 405 - -
Amo01g3078 405 Pfam Helix-loop-helix DNA-binding domain 225 270 IPR011598 GO:0046983
Amo01g3078 405 Gene3D - 215 277 IPR036638 GO:0046983
Amo01g3078 405 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 218 280 IPR036638 GO:0046983
Amo01g3078 405 PANTHER TRANSCRIPTION FACTOR BHLH69 25 371 - -
Amo01g3078 405 MobiDBLite consensus disorder prediction 37 60 - -
Amo01g3078 405 MobiDBLite consensus disorder prediction 133 153 - -
Amo01g3078 405 MobiDBLite consensus disorder prediction 166 209 - -
Amo01g3078 405 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 25 371 - -
Amo01g3078 405 MobiDBLite consensus disorder prediction 39 54 - -
Amo01g3078 405 MobiDBLite consensus disorder prediction 166 227 - -
Amo01g3078 405 SMART finulus 226 275 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3078 Amo-Chr1 102108850 102112980 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3078 197 404 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 64.807 1.33e-90 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo01g3078 HLH 1.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3078 - - jre:109012891 381.333