Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3072 ATGGCTATGCTCCGAAAATTGTTCTTTCGAAAACCCCCCGATGGCCTTCTCGAGATCTGTGAACGAGTCTATGTATTTGATTGCTGCTTCACCACTGATGCTTGGAGCGAAGAGAATTACAAAGTTTACATTGATGGTATAGTTGGTCATCTTAGGGAGAACTTGCAAGATGCTTCAATTCTTGTTTTCAATTTCAGAGAGGAAGACACCAAAAGCGTTATGGCAGATATATTATCTGAGTATGACATTACTATTATGGACTATCCGCGGCACTACGAGGGTTGTCCTGTGCTCAAGATGGAGCTCATTCACCATTTCTTAAGGTCTGGTGAGAGTTGGCTCTCTCTTGGGCAGCACAATGTGTTGTTAATGCATTGTGAGCGCGGAGGTTGGCCTGTTTTGGCCTTTATGCTAGCTGCATTGTTGATTTTTCGGAAGCTTTATACTGGGGAGCAACGGACTTTGGATATGGTGTATAAGCAGTCTCCCCGCGAGCTTTTACATTTGCTGACACCCTTGAATCCGATCCCTTCGCAGCTGAGGTATCTGCAGTATGTTTCAAGAAGGAATGTGGCCATAGATTGGCCACCGTTGGACAGGGCGCTCATGTTGGACTGCATCATCCTTAGATTCATCCCCAATTTCGATGGAGAAGGAGGCTGCCATCCCTTGTTTAGAATTTATGGGCAGGACCCTTTTAGTGGAGACAAGAATCCGAAAATGTTGTACTCAACGCCCAAGAGAAGCAAGAATATCCGGTGTTACAAGCAGGGAGAGAGTGAACTAATTAAGATTGATATCAGTTGCCATATTCAAGGTGATGTTGTGGTTGAGAGCACTAACTTGAACGCTGATATGGAGCAAGAAATGATGATGTTCCGAGTAATGTTCAACACTGCTTTTGTTAGATCTAATATTATGATGCTTAACCGGGATGAAGTTGACATTTTATGGGATGGTAAAGATCACTTTCCAAAGGATTTCAGAGCCGAGATCCTTTTCTCAGAAATGGATGCTGCTGCAGCTGTTATGGTGGATCGCACCTCATGCTTTGAGGAGAAGGAAGGACTGCCAGTGGAAGCATTTGCCAAGGTTCAAGAGATTTTTAACTATGTGGACTGGTTGGACCCCAATGCAGATGCTGCACTAAATGTTCTCCAACAGATGACTGCTTCGGCTATCATTAACGACAAGTTGGATACAGTTTCTGATCAGCATGGAGAAATGGGCACAATGCCTCAGGGGAAAATGAGTAAGCAATCCCCGGAAAATGAGAAGAGTAAAAAAGGTGACATGGCCAGCAAAGTTGATGCTACTCCAAAGGCATCTGATATTTCTTATTTGCCTGGTTCTATGGATGCTTCTTTTTCCCCAGAAACACCTCCTTTACGGCCTGCCCGAACTAGATTAGGCAAAGCATTTCATGATTCTCTTCCCCATACAGAAGTCAGTCATCAACTTATTGATGAAACTGAAGCCCAATTACAAGATAGAAGTCCGTCATCTATTTCTAGGTTTGCACCTGAGAGTCAATCGTCACCTACCTCTTGTAGTAAGTCACCAACTGATACCATCACCCTGGCTTCAAATTCAGGTATTACTTCAGTTCAGCCACCCCCTGCACTTTCTCCCAGAACACCGTTGAAGGAGATTCCACCTGTAAAAACAAGACTCGAGTCATTCTCACCGCCTCCACCCCCTCTTCCTCCTACTCCTCCTCCAAAGGATCATAAACCAGCTATAGTTAGATCTCCTCCACCTCCGCCACGTCCTTCAAATAACGATCTACATGTTATAGAAGGAGCCCCTCCTCCAGCATCACCTGCTTTAAAGGAAGAGCCACAGATAAAAGCTAGACACCCTCCTCCTCCTCCTCCTCCTCCTCCGCCTCCTGCAAAGGATGATTCACAGGTTAGAGCTAGATCCCCTCCACCACTGCCACCTCCTTGTCTCTCTGTCAAAGCTGAAGCTCCTAGTACACCATCAGCAGCACCACCGCCGCCGCCGCCACCGCCACCATCTGCATCATTTCCCTCCAATAAGCCTAATCCTTCTGTCCCAGCTGCTCCTCCACCTCCTTCTGCACCAGCTGCCCCTCCACCTCCTTCTGCACCAACTGCTCCACGACCTCCTTCTGCACCAGCTGCTCCACCACCTCCTGCTCCCTTTGGCAAAGGAGGTTCAAACCCAAGCAATGGTTTTCCAGGGTCTCTTTCGGATGGGTCCGGCTCAAAGGGACGGATTCTGTCACGTACTATTAGTTCAAAGAATAATGGCAAAAAGCTGAAGCCATTGCACTGGTTGAAACTATCTAGGGCGGTGCAAGGAAGTTTGTGGGCTGAGACACAGAAATCGGGTGAAGCTTCCAAAGCCCCAGAGATTGACATGTCAGAGCTTGAGAGTCTCTTCTCAGCAGCAGCCCCAAGTTCAGGTTCAACCAAGAAATCAAATTCCCAAAGCTCAGTTGGGCCTAAATCTGATAAAGTGCAGCTGATTGAGCATAGGCGAGCATACAATTGTGAAATCATGCTTTCAAAAGTGAAGGTGCCATTGCATGAATTAATGAGCTCAGTGCTAGCACTGGAAGAGTCAGCACTAGACATTGATCAGGTTGAGAATATCATAAAGTTTTGTCCTACGAAAGAAGAGATGGAATTACTTAAGGGTTATACAGGGGAAAAGGAGAAGTTAGGGAGGTGTGAACAGTTCTTCTTAGAGTTGATGCAAGTACCACGGGTAGAATCCAAGCTCAGAGTTTTTTCATTCAAAATTCAGTTCCAAACTCAGATCAGAGGTTCTGTCAAATTTAAGAGAGTTATGCAAACCATACTTTCCCTGGGCAATGCTTTGAACCAGGGAACTGCCAGGGGCTCTGCCATTGGATTCAGATTGGATAGTCTTCTGAAGCTTACTGAAACACGTGCACGGAACAAGAAGATGACTCTCATGCATTATCTTTGCAAGGTGCTGTCTGATAAACTACCAGAAGTTTTAGACTTCTCCAAGGATGTTGCTAACCTAGAGCCAGCAGCAAAGATCCAATTGAAGATTCTGGCAGAGGAGATGCAAGCTATAAGCAAAGGATTAGAGAAAGTTGTGCAGGAATTATCGATCTCTGAAAATGATGGTCCGATGTCAGAGACTTTCCGCAAGAATTTGAAAGGGTTCCTCTCTCATGCTGAAGCTGAAGTCCGTTCATTGGCTTCACTATATTCTCGCGTGGGTAGGAATGTAGACACGTTGATTCTTTATTTTGGGGAAGATCCATCACGGTGCCCTTTTGAGCAAGTTGTCAATACTCTGCTCAACTTCACTGGAATGTTTAACAAAGCACATGAAGAGAACAGCAAGCAGCTAGAGCTTGAAATGAAGAAAACAGCAGACGGTGACAAAAAGAAGTGTGAACAAGAAAAGATAATACCGGCAGCAATCTGGACCGGCAACGTCCAATGA 3453 0.4561 MAMLRKLFFRKPPDGLLEICERVYVFDCCFTTDAWSEENYKVYIDGIVGHLRENLQDASILVFNFREEDTKSVMADILSEYDITIMDYPRHYEGCPVLKMELIHHFLRSGESWLSLGQHNVLLMHCERGGWPVLAFMLAALLIFRKLYTGEQRTLDMVYKQSPRELLHLLTPLNPIPSQLRYLQYVSRRNVAIDWPPLDRALMLDCIILRFIPNFDGEGGCHPLFRIYGQDPFSGDKNPKMLYSTPKRSKNIRCYKQGESELIKIDISCHIQGDVVVESTNLNADMEQEMMMFRVMFNTAFVRSNIMMLNRDEVDILWDGKDHFPKDFRAEILFSEMDAAAAVMVDRTSCFEEKEGLPVEAFAKVQEIFNYVDWLDPNADAALNVLQQMTASAIINDKLDTVSDQHGEMGTMPQGKMSKQSPENEKSKKGDMASKVDATPKASDISYLPGSMDASFSPETPPLRPARTRLGKAFHDSLPHTEVSHQLIDETEAQLQDRSPSSISRFAPESQSSPTSCSKSPTDTITLASNSGITSVQPPPALSPRTPLKEIPPVKTRLESFSPPPPPLPPTPPPKDHKPAIVRSPPPPPRPSNNDLHVIEGAPPPASPALKEEPQIKARHPPPPPPPPPPPAKDDSQVRARSPPPLPPPCLSVKAEAPSTPSAAPPPPPPPPPSASFPSNKPNPSVPAAPPPPSAPAAPPPPSAPTAPRPPSAPAAPPPPAPFGKGGSNPSNGFPGSLSDGSGSKGRILSRTISSKNNGKKLKPLHWLKLSRAVQGSLWAETQKSGEASKAPEIDMSELESLFSAAAPSSGSTKKSNSQSSVGPKSDKVQLIEHRRAYNCEIMLSKVKVPLHELMSSVLALEESALDIDQVENIIKFCPTKEEMELLKGYTGEKEKLGRCEQFFLELMQVPRVESKLRVFSFKIQFQTQIRGSVKFKRVMQTILSLGNALNQGTARGSAIGFRLDSLLKLTETRARNKKMTLMHYLCKVLSDKLPEVLDFSKDVANLEPAAKIQLKILAEEMQAISKGLEKVVQELSISENDGPMSETFRKNLKGFLSHAEAEVRSLASLYSRVGRNVDTLILYFGEDPSRCPFEQVVNTLLNFTGMFNKAHEENSKQLELEMKKTADGDKKKCEQEKIIPAAIWTGNVQ* 1151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3072 1150 PANTHER FORMIN-J 1 1135 - -
Amo01g3072 1150 Gene3D - 199 340 - -
Amo01g3072 1150 MobiDBLite consensus disorder prediction 558 593 - -
Amo01g3072 1150 ProSiteProfiles Formin homology-2 (FH2) domain profile. 752 1134 IPR015425 -
Amo01g3072 1150 MobiDBLite consensus disorder prediction 493 760 - -
Amo01g3072 1150 Pfam Formin Homology 2 Domain 757 1108 IPR015425 -
Amo01g3072 1150 MobiDBLite consensus disorder prediction 403 467 - -
Amo01g3072 1150 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 337 IPR035892 -
Amo01g3072 1150 MobiDBLite consensus disorder prediction 805 827 - -
Amo01g3072 1150 Gene3D Protein tyrosine phosphatase superfamily 15 198 IPR029021 -
Amo01g3072 1150 SMART it6_source 752 1150 IPR015425 -
Amo01g3072 1150 MobiDBLite consensus disorder prediction 493 539 - -
Amo01g3072 1150 MobiDBLite consensus disorder prediction 619 634 - -
Amo01g3072 1150 Gene3D Formin, FH2 domain 751 1119 IPR042201 -
Amo01g3072 1150 MobiDBLite consensus disorder prediction 730 759 - -
Amo01g3072 1150 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 12 187 IPR029021 -
Amo01g3072 1150 MobiDBLite consensus disorder prediction 421 435 - -
Amo01g3072 1150 MobiDBLite consensus disorder prediction 805 826 - -
Amo01g3072 1150 ProSiteProfiles C2 tensin-type domain profile. 199 337 IPR014020 -
Amo01g3072 1150 MobiDBLite consensus disorder prediction 641 725 - -
Amo01g3072 1150 SMART PTEN_C2_2 197 336 IPR014020 -
Amo01g3072 1150 SUPERFAMILY Formin homology 2 domain (FH2 domain) 827 1127 - -
Amo01g3072 1150 Pfam C2 domain of PTEN tumour-suppressor protein 200 336 IPR014020 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3072 Amo-Chr1 102001756 102008520 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3072 1 400 Protein tyrosine phosphatase (PTP) family AT5G58160 67.082 0.0 612
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3072 - - ahf:112723424 2069.66