Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3066 ATGGCTGAGCAACCAAGCTCCGCCGAAGCTGTCACGGAGGGAGCGCCGGAGCTTCTCCCGAAAGAGAAGGATTCAGAAGGCGGCGAAGGTGGAAACGAACAAGGACAACAAGGGAAGGCGTCAGAGGGAGAAGAACGAGCTAGCGAATCGCCTTGCGAAACTGAGTCGCAGCGCGCCGTGATGAAGAGTTCTGATAAACCTCTGAAGGGGTCGAATTCAGGAACCCTAGCTGCTGAATCACCTGTTGTGAACAATCGGAGTGATGAATTGCAGGGGAGCCCTGCTACGCCGGATATGGATGTCAAAGCTGAAAGTAAGGAGACAGATGGACCTCGTGAAAAGGAAACTATTGCAAGTGAAGCAGTACAACCACCTCCAACTCAGATAGAAAATCAGCCACAGGTGTCTGCATGTTCAACTCCATTGTCAGAACTGTCACCAACCTCTGTTACACAATCTTTATCATCTGTTCCTAGTCAAATTGCCCCCAAACAGAAAATGCCACCTTTGAAGATTAATAATGTTCATGTGCCACAATTGGACAAAAAAATTCCTTCTGGTGGCAAACATGTTTCTTGTGGTTCTGTTGCAAGGGTTTCAGTTTCTGATGGTTACAGCTGGCGGAAGTATGGTCAGAAGCAAGTGAAGAGTCCCACAGGGTCTCGAAGCTATTACAGGTGTACTCATTCAGAATGTTCTGCAAAGAAGATTGAATGCAATGATGATGCGGGTCGTGTAATAGATGTTGTTTATAAAAGTCAACACAGTCATGATCCCCCACATAAGCCTAATTCTACAAGGGAAAGTAAGTTAGTGTCTTCCAGTGAACCTCCTAATGTAGAAAACAAAGTTTCTCAGCAGCTATCTATCAGAGGTCTGAAAAACTCTGATCCGTCTCCTTCAAAAGAAACCTTACAAGATGCACCTCGCACTGCTGACAAGAAAAGACCAAACTCATCTAATCTCAGTGACAATGGTAAAGTTATTTTGAAGGAGGAGCACGTTAATGAGCCAGAGCCAAAAAAAAGAATGAAGAAAGATGACTTAGCAGACTTGGATTCCCCTGTAAAATCTGGAAAGAAATCGAGGTTTGTTGTACATGCAGAAGGGGATGTAGGTATATCAGGTGATGGATACCGATGGCGCAAGTATGGACAGAAAATGGTGAAGGGGAATCCACATCCGAGAAACTACTACAGATGCACTTCTGCTGGGTGTCCTGTCCGAAAACACATTGAGACTGCTGTTGATAACTCGAACGCCGTCATCATAACATACAAGGGTGTACATGACCATGACATGCCTGTGCCAAAGAAACGACATGGCCCACCCAGTGCTCCTCTTGTGGCTGCTGCAGCTCCGGCATCCATGAACAATTCGCAGTCAAAGAAAAAACCTGATTCTCCTAAAAAACAGAACAAGTCTACTCAATGGTCGGTGGACACTGAAGGAGAACTAAGCGGGGAAGCCATGGATCTTGGAGGTGAAAAGGCAATGGAGTCAGCTCGCACACTTCTGAGCATAGGATTCGAAATTAAGCCATGCTGA 1548 0.4587 MAEQPSSAEAVTEGAPELLPKEKDSEGGEGGNEQGQQGKASEGEERASESPCETESQRAVMKSSDKPLKGSNSGTLAAESPVVNNRSDELQGSPATPDMDVKAESKETDGPREKETIASEAVQPPPTQIENQPQVSACSTPLSELSPTSVTQSLSSVPSQIAPKQKMPPLKINNVHVPQLDKKIPSGGKHVSCGSVARVSVSDGYSWRKYGQKQVKSPTGSRSYYRCTHSECSAKKIECNDDAGRVIDVVYKSQHSHDPPHKPNSTRESKLVSSSEPPNVENKVSQQLSIRGLKNSDPSPSKETLQDAPRTADKKRPNSSNLSDNGKVILKEEHVNEPEPKKRMKKDDLADLDSPVKSGKKSRFVVHAEGDVGISGDGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIETAVDNSNAVIITYKGVHDHDMPVPKKRHGPPSAPLVAAAAPASMNNSQSKKKPDSPKKQNKSTQWSVDTEGELSGEAMDLGGEKAMESARTLLSIGFEIKPC* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3066 515 MobiDBLite consensus disorder prediction 121 162 - -
Amo01g3066 515 Gene3D WRKY domain 359 436 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo01g3066 515 Gene3D WRKY domain 190 261 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo01g3066 515 MobiDBLite consensus disorder prediction 1 170 - -
Amo01g3066 515 MobiDBLite consensus disorder prediction 100 116 - -
Amo01g3066 515 SUPERFAMILY WRKY DNA-binding domain 199 260 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo01g3066 515 MobiDBLite consensus disorder prediction 327 356 - -
Amo01g3066 515 MobiDBLite consensus disorder prediction 251 356 - -
Amo01g3066 515 ProSiteProfiles WRKY domain profile. 202 260 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo01g3066 515 MobiDBLite consensus disorder prediction 251 265 - -
Amo01g3066 515 SMART WRKY_cls 201 259 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo01g3066 515 SMART WRKY_cls 375 434 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo01g3066 515 MobiDBLite consensus disorder prediction 266 306 - -
Amo01g3066 515 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 31 513 IPR044810 GO:0003700
Amo01g3066 515 MobiDBLite consensus disorder prediction 432 495 - -
Amo01g3066 515 MobiDBLite consensus disorder prediction 66 92 - -
Amo01g3066 515 PANTHER WRKY TRANSCRIPTION FACTOR 32-RELATED 31 513 - -
Amo01g3066 515 ProSiteProfiles WRKY domain profile. 370 435 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo01g3066 515 SUPERFAMILY WRKY DNA-binding domain 371 435 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo01g3066 515 Pfam WRKY DNA -binding domain 203 257 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo01g3066 515 Pfam WRKY DNA -binding domain 377 432 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3066 Amo-Chr1 101931341 101935441 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3066 88 515 WRKY Transcription Factor Family AT4G30935 51.034 4.51e-131 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo01g3066 WRKY 1.8e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3066 - - gmx:100782194 642.499