Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3061 ATGTTTGACGCTGGTTACAAGTCACAATACATGGGTAGCCAGCAGGACAAACTTTACAGGTTGGAAGTCTTTGATTCTAGACTATCTTCATCTACTGATGCTGGAGTTAAAAATTCTGGATTTAGTATTGATAAATTAAGCAATAGTGGTCATGGAAGCTGCACAACCTCTAGGTCCTTTAAAAGAGGAATGAGAAAGGGATCTGAAGGGCTGAAATCAATTGGCCGATCACTTGGATTTGGGGTATCTAAGGCAGTGTTTCCGGAAGATCTTAAAGTGTCTGAAAAGAAGATATTTGATCCTCAAGACAAATTTTTGCTCTTATGGAATAAACTTTCTCTTATCTCATGCATTTTGGCCGTGTCTGTGGATCCGCTGTTCTTTTATCTTCCTGTCATTGATGATCAAGCACACTGTGTTGGCATAGACCGAAAGTTGGCAGTTATAGCTACAACCTTAAGGACAGTCATTGATGCTTTCTATCTTATACACATGGCGCTCCAATTTCGTACTGCATATATTGCTCCATCATCTCGTGTCTTTGGACGGGGTGAGCTGGTCATAGATCCGGCACAGATAGCCAAGCGTTACTTGCAGCGATATTTCATCATTGATTTCCTATCTGTATTTCCCTTACCACAGATTGTGGTTTGGAGATTTCTTCTGAGGTCAAACGGTTCAGATGTACTTCCAACAAAGCAGGCCTTGCTGTTCATTGTCTTGTTTCAGTATGTTCCCAGATTTTTCCGAATGGTTCCATTAACTTCAGAACTTAAAAGAACAGCTGGTGTATTTGCTGAAACCGCGTGGGCTGGTGCTGCATATTACTTGCTGCTATATATGCTTGCCAGTCATATAGTTGGAGCATTTTGGTACTTGTTAGCAATTGAACGCAACGACTTTTGCTGGCAGAAGGCTTGCCGCAATGATTGCAACAAAAACTTCCTGTATTGTGGCAACCAAAACATGGTAGGTTATGCTGCCTGGAAGAATATAAGTGACAGTACTCTTAAGTTAAAATGTGCTGCAGATGGGGACAATCCACCTTTTGATTATGGAATTTTTAACCAAGCTTTGACATCTGATATTGTTTCATCATCTAAGAATTTCTTCTCCAAATACTGTTACTGTTTATGGTGGGGGCTCCAGAATCTGAGTACACTTGGTCAGGGGCTTCAAACTAGCACCTATCCTGGTGAGGTTATATTTTCTATAGCACTAGCTATTGCTGGACTCATTCTCTTTGCACTTCTGATTGGCAACATGCAGACATATCTTCAGTCTCTTACCATTAGGCTTGAGGAAATGAGGGTGAAAAGGCGTGATTCAGAACAGTGGATGCATCATCGCTTGCTTCCACAAGATCTTAGAGAGCGTGTGAGACGTTATGATCAATATAAGTGGTTGGCAACACGTGGTGTAGATGAAGAAAACTTGGTTCAGAGTCTACCAAAGGATCTGCGAAGAGATATTAAGCGACATCTTTGTCTAGCTTTAGTGAGGAGGGTTCCTCTATTTGAGAGTATGGATGAGAGATTGCTTGATGCCATATGTGAGAGACTGAAACCATGTTTATTTACAGAGAATACATACATTGTCCGCGAAGGAGATCCAGTTGATGAGATGCTTTTCATTATACGAGGTCGCCTTGAGAGTGTCACTACAGATGGTGGGAGAAGTGGATTTTTCAACCGTGGTTTTCTAAAAGAGGCTGACTTCTGTGGTGAGGAACTCTTGACCTGGGCACTGGATCCCAGATCTGGCTCTAATCTCCCATCTTCTACTAGAACAGTTAAGGCACTGACTGAGGTAGAAGCTTTTGCCTTAACTGCTGATGAGTTAAAGTTTGTAGCCAGTCAGTTTAGGCGCCTTCACAGTAGACAGGTGCAGCACACTTTCCGTTTTTACTCCCAACAATGGAGGACTTGGGCTGCGTGCTTTATTCAAGCAGCGTGGCGCCGATATTCTAAAAAGAAACTTATGAAGCTTCGCCAGAAGGAAGAAGATCCCGATGAGTCAGAAGGAACTCAAAACAATGCTGGTGGCACTTCATACAGCCTCGGTGCTGCCTTGTTAGCCTCAAAATTTGCTGCGCACACTCTTCGAGGCGTACAACGCAATCGAAATGCCAGGACTGCCAGGGAGTTGGTGAAACTACAGAAACCACCAGAACCTGATTTTACAGCAGATGATGCAGACTAA 2202 0.4282 MFDAGYKSQYMGSQQDKLYRLEVFDSRLSSSTDAGVKNSGFSIDKLSNSGHGSCTTSRSFKRGMRKGSEGLKSIGRSLGFGVSKAVFPEDLKVSEKKIFDPQDKFLLLWNKLSLISCILAVSVDPLFFYLPVIDDQAHCVGIDRKLAVIATTLRTVIDAFYLIHMALQFRTAYIAPSSRVFGRGELVIDPAQIAKRYLQRYFIIDFLSVFPLPQIVVWRFLLRSNGSDVLPTKQALLFIVLFQYVPRFFRMVPLTSELKRTAGVFAETAWAGAAYYLLLYMLASHIVGAFWYLLAIERNDFCWQKACRNDCNKNFLYCGNQNMVGYAAWKNISDSTLKLKCAADGDNPPFDYGIFNQALTSDIVSSSKNFFSKYCYCLWWGLQNLSTLGQGLQTSTYPGEVIFSIALAIAGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRLLPQDLRERVRRYDQYKWLATRGVDEENLVQSLPKDLRRDIKRHLCLALVRRVPLFESMDERLLDAICERLKPCLFTENTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEADFCGEELLTWALDPRSGSNLPSSTRTVKALTEVEAFALTADELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKKKLMKLRQKEEDPDESEGTQNNAGGTSYSLGAALLASKFAAHTLRGVQRNRNARTARELVKLQKPPEPDFTADDAD* 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3061 733 SUPERFAMILY Voltage-gated potassium channels 100 427 - -
Amo01g3061 733 Pfam Ion transport protein 108 431 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Amo01g3061 733 ProSiteProfiles IQ motif profile. 641 670 IPR000048 GO:0005515
Amo01g3061 733 ProSiteProfiles cAMP/cGMP binding motif profile. 505 589 IPR000595 -
Amo01g3061 733 SMART cnmp_10 505 636 IPR000595 -
Amo01g3061 733 MobiDBLite consensus disorder prediction 703 733 - -
Amo01g3061 733 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 15 730 - -
Amo01g3061 733 MobiDBLite consensus disorder prediction 708 733 - -
Amo01g3061 733 Gene3D Helix hairpin bin 433 496 - -
Amo01g3061 733 SUPERFAMILY cAMP-binding domain-like 434 625 IPR018490 -
Amo01g3061 733 Gene3D Jelly Rolls 503 623 IPR014710 -
Amo01g3061 733 Pfam Cyclic nucleotide-binding domain 526 616 IPR000595 -
Amo01g3061 733 CDD CAP_ED 505 636 IPR000595 -
Amo01g3061 733 PANTHER NUCLEOTIDE-GATED ION CHANNEL, PUTATIVE-RELATED 15 730 - -
Amo01g3061 733 Gene3D - 117 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3061 Amo-Chr1 101899332 101905815 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3061 1 731 Ion Channels AT2G23980 75.234 0.0 1141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3061 K05391 - gmx:100784309 1251.88