Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3057 ATGCTAATTTTTTACAATTCTGTTATGATATCAGAGTCACTTAAACCAGTGACTCATGGGATTCAACTCTTCAAAGAAGTTAAGGAGCTCAACTCACAGAATCCCTCTTTCATGGTCAAGATAAGAGACAGTAATCCAAGGAGATCAAGGCCTAACTTATCAGCTATCTTCTACAGAAAGTATTTTAAAAAGAATCAGCAGGATGTAAAGTTACAGTTTGGAAAGGAATCGTGGCCTGCTACGATAATCTACAATCCGACATCGAAAAATAGCTTTATTTCGGCTGGTTGGAGTTCTTTTGCTAGAGCAAGTAAATTAGAAGCTGGAGATGTTTGTGTTTTTGAACTCATCAATAAAAAAGATCTATTTGATGTTCATATTTGTAGAACCCAATACTAG 399 0.3559 MLIFYNSVMISESLKPVTHGIQLFKEVKELNSQNPSFMVKIRDSNPRRSRPNLSAIFYRKYFKKNQQDVKLQFGKESWPATIIYNPTSKNSFISAGWSSFARASKLEAGDVCVFELINKKDLFDVHICRTQY* 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3057 132 CDD B3_DNA 35 129 IPR003340 GO:0003677
Amo01g3057 132 PANTHER B3 DOMAIN-CONTAINING 21 130 - -
Amo01g3057 132 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 21 130 - -
Amo01g3057 132 Pfam B3 DNA binding domain 46 130 IPR003340 GO:0003677
Amo01g3057 132 Gene3D - 21 132 IPR015300 -
Amo01g3057 132 SUPERFAMILY DNA-binding pseudobarrel domain 30 129 IPR015300 -
Amo01g3057 132 SMART B3_2 37 131 IPR003340 GO:0003677
Amo01g3057 132 ProSiteProfiles B3 DNA-binding domain profile. 36 131 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3057 Amo-Chr1 101876417 101876939 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3057 27 122 REM Transcription Factor Family AT1G49480 32.990 7.93e-09 50.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Amo01g3057 B3 9.8e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3057 - - ahf:112785297 221.476