Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3056 ATGGCTTCCTCTAGTTTCCAAGTGACCTGTTTCTACAAGATTGTTCTCAGACAAAGCCTTGAAGATGGAAATCTTACGATACCAAAAACGTTCAGTATGAAATATGGTGACGGTGTTCCAAATCCAGTGTATCTGAAGCCTCCAGATGGCACTGCTTGGAAGATAGATTGGTCTGAGTATGATGGTGCCATTCTATTTGAAAATGGTTGGAAAGAATTTGCTTCATATTACTCTTTGGATCATGGCCATATGCTGTGGTTTGAGTACAATGAAACTTGTAACATTGAAGTAAACATTTTTGACATGACTTGCCTTGAAATAGACTATCCTTCCTTGGATCACATCAGCGATGACGATTCGATTGAGATCTTGAATGAACTGCCCCCACGAGGCAACTATCCTTCCAAGGATCACATTGATGATGGCAACAAGGTTAAGGTTGAGAATGAACCGCCACGAAGAGGCCGAGGCCGGCCGAGGAAAACAGAGAAAGCAGCACCAAAGACACCATCTCCTTGTACAAGCAAAATGTTCACAAGTTCTGCCAAAACTAAAGAAGTGAAATGGCGCGCTGAAATACAATATCCTTCCAAGCACCACATCGATGAGGACAACATGGCTAAGGTCAGGGACGGATTTATATTGGCAAGTGCCCCCACTGAATTTTAA 669 0.4275 MASSSFQVTCFYKIVLRQSLEDGNLTIPKTFSMKYGDGVPNPVYLKPPDGTAWKIDWSEYDGAILFENGWKEFASYYSLDHGHMLWFEYNETCNIEVNIFDMTCLEIDYPSLDHISDDDSIEILNELPPRGNYPSKDHIDDGNKVKVENEPPRRGRGRPRKTEKAAPKTPSPCTSKMFTSSAKTKEVKWRAEIQYPSKHHIDEDNMAKVRDGFILASAPTEF* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3056 222 CDD B3_DNA 10 101 IPR003340 GO:0003677
Amo01g3056 222 ProSiteProfiles B3 DNA-binding domain profile. 10 103 IPR003340 GO:0003677
Amo01g3056 222 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 8 187 - -
Amo01g3056 222 Pfam B3 DNA binding domain 18 101 IPR003340 GO:0003677
Amo01g3056 222 Gene3D - 4 104 IPR015300 -
Amo01g3056 222 MobiDBLite consensus disorder prediction 168 182 - -
Amo01g3056 222 MobiDBLite consensus disorder prediction 125 183 - -
Amo01g3056 222 MobiDBLite consensus disorder prediction 133 165 - -
Amo01g3056 222 PANTHER B3 DOMAIN-CONTAINING 8 187 - -
Amo01g3056 222 SUPERFAMILY DNA-binding pseudobarrel domain 4 102 IPR015300 -
Amo01g3056 222 SMART B3_2 11 103 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3056 Amo-Chr1 101874705 101875503 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3056 8 123 B3 DNA Binding Superfamily AT4G01580 38.333 1.26e-17 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Amo01g3056 B3 9.3e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3056 - - ahf:112700056 434.106