LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo01g3054	ATGATGAGGATGGCAGCAATGTTGTTCTATATGATGGTGTTTGCAACAATATGTTCATCATCATCATCCATGGCAATAACAAGAGAGCAAGAAGAAGATAGAATAAGAGAGCTTCCGGGTCAGCCACGTGTCAGATTCTCACAGTTCTCAGGATATGTAAGTGTAAACAAGAAACATGGTAGAGCACTCTTCTACTGGCTCACTCAGTCTCCCTCTTCTCCCAACAACAAACCTCTTCTTCTCTGGCTCAATGGAGGACCTGGTTGTTCATCAGTAGCATATGGGGCATCAGAGGAAATTGGACCATTCAGGATAAACAAAACTGGTTCTTCTTTATATCTTAACAGATATGCTTGGAACAAAGAAGCAAATATTCTGTTTCTTGAATCACCTGCTGGTGTTGGTTTTTCATACACAAATATCAGCTCTGATCTCCTAACTTCAGGGGACAAAAGAACAGCTCAGGATGCACTGATTTTTCTAGTTAAATGGATGTCAAGATTCCCACAGTATAAATATAGGGACTTTTACATTGCTGGGGAAAGTTATGCAGGTCATTATGTGCCTCAGTTGGCTAAGAAAATCTATGATTATAACAAAGAACATCCCAACATTATTAATCTCAAAGGGTTCATTGTGGGAAATGCTGTGACTGATAACTACCATGATAGCATTGGAACTGTGACATATTGGTGGAGCCATTCAATGATATCAGATCATTCATACAAATCTATCATCAAACATTGTGATTTCAAAGCACAGAACACTTCTCAAGAATGCAATGATGCTGTGAACTATGCAGTCAACAATGAATTTGGAAACATTGATCAATACAGTATCTATACTCCTACATGCCCAGCATCACAAAACAGCACTCTTAGGCGCATAAGGCTAAAGACTACAATGTTTCATATGATTTCTGGCTATGATCCTTGTACTGAAAATTATGCAGAGAAATATTATAATCTTCCTCAAGTGCAGAAAGCAATGCATGCAAATGTTACCAACATTCCTTACAAATGGACTGCTTGCAGTGATGTGCTCCTGAAAAATTGGAAGGACTCTGAATTTTCTATATTGCCCATATACAAAGAGTTAATTGCAGCTGGATTGAGAATATGGGTTTTCAGCGGGGACACAGATTCAGTGGTTCCAGTTACAGCCACAAGGTTTTCACTCAACCATCTCAACCTCACCATTAAAACTCCTTGGTATCCATGGTACTCATCAGGTGCACAGGTAGGTGGATGGACAGAGGTATATGATGGACTGACATTTGCAACAGTGAGAGGAGCTGGACATGAAGTACCTCTGTTTCAGCCAGAGAGAGCTCACATTCTTTTCAAGTCATTTTTGGCAGGGAAGAAGCTACCAAAGTCTTGA	1383	0.3984	MMRMAAMLFYMMVFATICSSSSSMAITREQEEDRIRELPGQPRVRFSQFSGYVSVNKKHGRALFYWLTQSPSSPNNKPLLLWLNGGPGCSSVAYGASEEIGPFRINKTGSSLYLNRYAWNKEANILFLESPAGVGFSYTNISSDLLTSGDKRTAQDALIFLVKWMSRFPQYKYRDFYIAGESYAGHYVPQLAKKIYDYNKEHPNIINLKGFIVGNAVTDNYHDSIGTVTYWWSHSMISDHSYKSIIKHCDFKAQNTSQECNDAVNYAVNNEFGNIDQYSIYTPTCPASQNSTLRRIRLKTTMFHMISGYDPCTENYAEKYYNLPQVQKAMHANVTNIPYKWTACSDVLLKNWKDSEFSILPIYKELIAAGLRIWVFSGDTDSVVPVTATRFSLNHLNLTIKTPWYPWYSSGAQVGGWTEVYDGLTFATVRGAGHEVPLFQPERAHILFKSFLAGKKLPKS*	461

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo01g3054	460	Gene3D	-	359	454	-	-
	Amo01g3054	460	Gene3D	alpha/beta hydrolase	29	287	IPR029058	-
	Amo01g3054	460	SUPERFAMILY	alpha/beta-Hydrolases	30	457	IPR029058	-
	Amo01g3054	460	ProSitePatterns	Serine carboxypeptidases, histidine active site.	424	441	IPR033124	GO:0004185
	Amo01g3054	460	Pfam	Serine carboxypeptidase	40	453	IPR001563	GO:0004185\|GO:0006508
	Amo01g3054	460	Gene3D	-	312	349	-	-
	Amo01g3054	460	PRINTS	Carboxypeptidase C serine protease (S10) family signature	424	437	IPR001563	GO:0004185\|GO:0006508
	Amo01g3054	460	PRINTS	Carboxypeptidase C serine protease (S10) family signature	128	138	IPR001563	GO:0004185\|GO:0006508
	Amo01g3054	460	PRINTS	Carboxypeptidase C serine protease (S10) family signature	115	127	IPR001563	GO:0004185\|GO:0006508
	Amo01g3054	460	PRINTS	Carboxypeptidase C serine protease (S10) family signature	164	189	IPR001563	GO:0004185\|GO:0006508
	Amo01g3054	460	PANTHER	SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE	12	459	IPR001563	GO:0004185\|GO:0006508
	Amo01g3054	460	PANTHER	SERINE CARBOXYPEPTIDASE 24	12	459	-	-
	Amo01g3054	460	ProSitePatterns	Serine carboxypeptidases, serine active site.	178	185	IPR018202	GO:0004185

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo01g3054	Amo-Chr1	101858697	101862704	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo01g3054	303	457	Calmodulin-binding Proteins	AT2G22960	28.846	1.66e-12	64.3

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo01g3054	K16297		-	gmx:100783242	786.178