Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3051 ATGGACTTCAACCACCGAGCTATTGGGGTTACGCCACCGACGCAGTCCTTATACACGGCCTTCCCTCCTCCCCCTCCTTCTCCCGCCACCGCCGTCTACTCCGACCGATTGTTGCGAGGTGAGTTTCTAAACATGGTTTCAATGCCGCTGACCAATGCGGTTGCCGGAGACTCCATGCGGGAACTGGAGAAGGCGCAGATACGGCGAGAGATGATTGCCAGCGGCGTTGCACGGAGGATTCAGCTTGAAGCTGAGGTGAGGAGGGAGCTCGCCTTGGAAGCATTGTTGGGAATTCTTCCAATGCAGAGAGGAAATCTGAGTGAATCAGTGCAGCTTCAGCCACCGCCACCGCCACCGCCCCCGCCACCGCCACCGCGTCGATCCTTGGTTGAGGAGAGAGTGGCAATGAGTTTAAATAACCGTTTCAATAGTACATTTGCCCCACCAAAATCACAACAGTTGCAGCAACTCATGGCTCCTGTGAAGATAGAGCCTTGTCCTGAAGAGACTAGCAAGAAGGATAAAGTGATCATACTGGGCAAGCCAAACCCAGCTCTCCATTCCGGAAAGCAGAAAGCTGTAATACCCCGGCTTGATGAGCATCATAAACCCAAGGAAGTGTGGAGTTGTGCGCTATGTCAGGTTAGTGCTCCAAATCAGGGAGTCTTTAGTGCACATCTTCAGGGTAGGAAGCACAAGGCCAAGGAAGCATCATTGAGACAACAGAACAATAGTAAGAGCACCGACATGTCAGCGTCGTCAAAGAGAAGAAAGTCTAATGAGTTTACTGCATCCATTGCTGCCACAATATCAAGGTCAAGCGCAGAAGCAGATCAGCAGGTGAAGAATCTAAATATGGTTGATACAGCTAGAGTAGAATCTAAAAAAGAGGAGCAGCCTGAGCAGAACAGGCAAAATATAGAACCTCTGAAGAACAAGAATGGTACAACAACCACCATTGGTGATCAAGCGGAGAGAAGAAATGCATTAAAGAAAATACACGCGAAATTTTGGTGTGAAACGTGTCAGGTTGGAGTTTGGGCAGAAGCTGTGATGGAAGACCACTTGAAAGGGAAAAAGCACCTGAACCAAATGAAGAAACTTGGCGCAAACCATTCGAGTTCCGCATCTTCCGACATCACAAAAAGCTCCTGTCAATTTGATCAAAGATAA 1173 0.4893 MDFNHRAIGVTPPTQSLYTAFPPPPPSPATAVYSDRLLRGEFLNMVSMPLTNAVAGDSMRELEKAQIRREMIASGVARRIQLEAEVRRELALEALLGILPMQRGNLSESVQLQPPPPPPPPPPPPRRSLVEERVAMSLNNRFNSTFAPPKSQQLQQLMAPVKIEPCPEETSKKDKVIILGKPNPALHSGKQKAVIPRLDEHHKPKEVWSCALCQVSAPNQGVFSAHLQGRKHKAKEASLRQQNNSKSTDMSASSKRRKSNEFTASIAATISRSSAEADQQVKNLNMVDTARVESKKEEQPEQNRQNIEPLKNKNGTTTTIGDQAERRNALKKIHAKFWCETCQVGVWAEAVMEDHLKGKKHLNQMKKLGANHSSSASSDITKSSCQFDQR* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3051 390 MobiDBLite consensus disorder prediction 290 304 - -
Amo01g3051 390 PANTHER OS06G0651300 PROTEIN 1 381 - -
Amo01g3051 390 Gene3D Classic Zinc Finger 320 367 - -
Amo01g3051 390 SMART ZnF_U1_5 334 368 IPR003604 GO:0003676|GO:0008270
Amo01g3051 390 SMART ZnF_U1_5 205 239 IPR003604 GO:0003676|GO:0008270
Amo01g3051 390 MobiDBLite consensus disorder prediction 290 319 - -
Amo01g3051 390 MobiDBLite consensus disorder prediction 108 127 - -
Amo01g3051 390 MobiDBLite consensus disorder prediction 111 127 - -
Amo01g3051 390 Pfam Zinc-finger of C2H2 type 337 361 - -
Amo01g3051 390 Pfam Zinc-finger of C2H2 type 208 232 - -
Amo01g3051 390 MobiDBLite consensus disorder prediction 367 390 - -
Amo01g3051 390 Gene3D Classic Zinc Finger 199 245 - -
Amo01g3051 390 SUPERFAMILY beta-beta-alpha zinc fingers 322 368 IPR036236 -
Amo01g3051 390 MobiDBLite consensus disorder prediction 227 260 - -
Amo01g3051 390 MobiDBLite consensus disorder prediction 305 319 - -
Amo01g3051 390 SUPERFAMILY Formin homology 2 domain (FH2 domain) 115 124 - -
Amo01g3051 390 PANTHER OS06G0651300 PROTEIN-RELATED 1 381 - -
Amo01g3051 390 SUPERFAMILY beta-beta-alpha zinc fingers 180 243 IPR036236 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3051 183 366 C2H2 Transcription Factor Family AT5G61190 26.699 2.33e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3051 - - adu:107459277 674.085