Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3041 ATGGCTACAAAGGAAGGAAAAGCCATAGGCATAGACCTAGGCACAACCTACAGCTGCGTGGGGGTGTGGCAAAACGACCGCGTTGAGATCATCCCCAACGACCAAGGCAACAGAACCACCCCTTCATACGTTGCCTTCACAGACACCGAGCGTCTCATCGGCGACGCTGCCAAGAATCAAGTCGCCATGAACCCTAAGAACACCGTCTTCGACGCAAAGCGCTTAATCGGTCGCAGATTCTCCGACGCGTCCGTACAAAACGACATGAAGCTGTGGCCGTTTAAGGTCATTGCTGGTGCCGGTGACAAGCCAATGATCGTCGTGACGTACAAAGGAGAAGAGAAAACTTTCGCGGCGGAGGAGATATCTTCCATGGTTCTGATCAAGATGAGGGAAGTTGCGGAAGCGTTTCTTGGCCATCCGATCAAGAACGCGGTTATAACCGTCCCTGCTTATTTCAACGACTCTCAGAGGCAGGCCACGAAGGATGCAGGGGCAATTTCGGGATTGAATGTTTTGCGGATCATCAACGAGCCAACCGCTGCTGCTATCGCTTACGGTTTGGACAAGAAAGCTTCTAGAAAAGGCGAGCAGAACGTTCTCATCTTCGATCTCGGTGGCGGAACCTTCGATGTTTCGCTCTTGACAATCGAAGAAGGGATCTTCGAAGTGAAAGCCACTGCCGGAGATACTCATCTTGGTGGCGAAGATTTTGATAACAGAATGGTGAATCATTTTGTTGCGGAGTTCAAAAGAAAGAACAAGAAGGATATTAGCGGCAACCCTAGGGCTTTGAGGAGGTTGAGAACTGCGTGTGAGAGAGCTAAGAGAACGCTCTCTTCAACTGCGCAGACGACGATTGAAATCGATTCTCTAGCGAGGTTTGAGGAATTGAACATGGATCTGTTCAGGAAGTGCATGGAGCCGGTGGAGAAGTGTCTTCGTGATGCGAAGATCGATAAGAGTCAGGTTCATGAAGTTGTTCTTGTTGGAGGATCTACAAGGATTCCAAAAGTTCAGCAGCTTCTTCAAGATTTCTTCAATGGTAAAGAGCTTTGCAAGAGTATCAACCCTGATGAAGCTGTTGCTTATGGTGCTGCGGTTCAAGCCGCAATTCTGAGCGGTGAAGGTGACGAGAAGGTTCAGGACTTGCTGCTTCTCGATGTCACGCCGCTCAGTCTTGGACTTGAAACCGCCGGCGGAGTCATGACGGTTTTGATTCCGAGGAACACGACTATTCCAACGAAGAAGGAGCAGATTTTCTCAACATACTCTGATAATCAGCCTGGTGTTCTAATCCAAGTGTACGAAGGAGAACGAGCGAGAACAAAGGATAACAATCTTCTCGGGAAATTCGAGCTGACCGGAATCCCTCCGGCGCCGAGAGGAGTTCCGCAGATCAATGTGTGTTTTGATATCGATGCGAATGGGATCTTGAATGTTTCAGCTGAGGATAAGACGGCAGGGGTGAAGAACAAGATAACGATCACGAACGATAAAGGAAGGTTGAGCAAGGATGAGATAGAGAAGATGGTTAAGGATGCAGAGAGGTATAGGGCAGAGGATGAGGAAGTGAAGAAGAAGGTGGAGGCGAAGAACTCTCTGGAGAACTACGCTTACAACATGAGGAACACGATAAGGGACGAGAAGATTGCTGGGAAGTTGAGTGCTGATGATAAGGGGAAGATTGAGAAGGCGGTGGAGGATGCTATTGAATGGTTGGAAGGGAACCAGATGGCGGAGGTGGATGAGTTTGAGGACAAGCAGAAGGAGTTGGAAGGAATATGTAACCCCATCATTGCTAAGTTGTATCAGGGTGGTGGTGGTGGTGGTGGTGAAGATGCTCCAATGGGTGGTGCTCATGACATGCCTGCTGGTGGTTCATCTGATTCTGGTGCTGGACCCAAGATTGAAGAAGTTGACTAA 1926 0.4907 MATKEGKAIGIDLGTTYSCVGVWQNDRVEIIPNDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPKNTVFDAKRLIGRRFSDASVQNDMKLWPFKVIAGAGDKPMIVVTYKGEEKTFAAEEISSMVLIKMREVAEAFLGHPIKNAVITVPAYFNDSQRQATKDAGAISGLNVLRIINEPTAAAIAYGLDKKASRKGEQNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVAEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLARFEELNMDLFRKCMEPVEKCLRDAKIDKSQVHEVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGDEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVCFDIDANGILNVSAEDKTAGVKNKITITNDKGRLSKDEIEKMVKDAERYRAEDEEVKKKVEAKNSLENYAYNMRNTIRDEKIAGKLSADDKGKIEKAVEDAIEWLEGNQMAEVDEFEDKQKELEGICNPIIAKLYQGGGGGGGEDAPMGGAHDMPAGGSSDSGAGPKIEEVD* 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3041 641 Gene3D - 532 606 IPR029048 -
Amo01g3041 641 CDD HSPA1-2_6-8-like_NBD 8 374 - -
Amo01g3041 641 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 378 531 IPR029047 -
Amo01g3041 641 Coils Coil 508 528 - -
Amo01g3041 641 ProSitePatterns Heat shock hsp70 proteins family signature 2. 202 215 IPR018181 -
Amo01g3041 641 SUPERFAMILY Actin-like ATPase domain 7 190 IPR043129 -
Amo01g3041 641 Gene3D - 70 125 - -
Amo01g3041 641 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 379 536 IPR029047 -
Amo01g3041 641 MobiDBLite consensus disorder prediction 605 641 - -
Amo01g3041 641 ProSitePatterns Heat shock hsp70 proteins family signature 3. 327 341 IPR018181 -
Amo01g3041 641 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 530 611 IPR029048 -
Amo01g3041 641 ProSitePatterns Heat shock hsp70 proteins family signature 1. 11 18 IPR018181 -
Amo01g3041 641 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 37C-RELATED 3 612 - -
Amo01g3041 641 PANTHER HEAT SHOCK PROTEIN 70KDA 3 612 IPR013126 GO:0005524|GO:0140662
Amo01g3041 641 Gene3D - 191 353 - -
Amo01g3041 641 Gene3D - 9 371 - -
Amo01g3041 641 Pfam Hsp70 protein 8 605 IPR013126 GO:0005524|GO:0140662
Amo01g3041 641 SUPERFAMILY Actin-like ATPase domain 195 375 IPR043129 -
Amo01g3041 641 Gene3D Actin; Chain A, domain 4 234 305 - -
Amo01g3041 641 PRINTS 70kDa heat shock protein signature 356 376 - -
Amo01g3041 641 PRINTS 70kDa heat shock protein signature 383 402 - -
Amo01g3041 641 PRINTS 70kDa heat shock protein signature 35 47 - -
Amo01g3041 641 PRINTS 70kDa heat shock protein signature 324 340 - -
Amo01g3041 641 PRINTS 70kDa heat shock protein signature 7 20 - -
Amo01g3041 641 PRINTS 70kDa heat shock protein signature 464 480 - -
Amo01g3041 641 PRINTS 70kDa heat shock protein signature 208 218 - -
Amo01g3041 641 PRINTS 70kDa heat shock protein signature 57 65 - -
Amo01g3041 641 PRINTS 70kDa heat shock protein signature 145 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3041 Amo-Chr1 101776251 101778212 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3041 1 641 Calmodulin-binding Proteins AT1G16030 82.927 0.0 1121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3041 K03283 - gmx:100782173 1145.18