LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo01g3033	ATGGGGTGGTCTCAAGTGATAACCTTGACCACTCTTGTTGTTGGGGCCATGGCCATTACTGTTACATGTTCTCCCTTTGTGCAGCAAAAGCTAGACAAGGTTGGAAAGCTACCAGGTCAATCTTTTGCTATCAAGTTCCAACACTATTCTGGCTATGTCACTGTTAACGAGGAAGCTGGAAGGGCCCTCTTTTACTGGTTCATGGAGGCTGATCAGGACCCTCAAACCAAACCCCTTCTCTTATGGCTCAATGGAGGGCCTGGATGTTCATCCATTGCTTTTGGTGAGGCAGAAGAAATTGGCCCCTTTCATATAAATCCAGATGGAAACACACTTTATCTGAATCCTTACTCTTGGAACCAAGTTGCCAACGTTCTTTTTCTTGATTCTCCTGTTGGAGTTGGATTTTCATATTCAAACACTTCATCTGACATTCTTAACAATGGCGACAAGAGGACTGCTGAGGACTCTCTAACATTCTTATTGAAGTGGTTTGAGCGTTTCCCCCAATATAAAGGAAGGGACTTCTTTATCGCCGGCGAGAGCTATGCAGGGCATTATGTTCCTCAACTTAGCCAAGCTATCTTGAAGTACAACTCGGAAACAAAGAAAAATGCTATAAATCTGAAAGGATACTTGGTTGGAAATGCTCTTACTGATGATTTCCATGACCATTTGGGGGTTGCTCAGTTTATGTGGGCAAGTGGTTTGATTTCTGATCAAACATACAAATTATTGAACCAATGTGATTCCGAGTCATTCGTACATCCCTCAAATTCTTGCAATCAGGCTTTTGAAAATGCCGATGTAGAGCTTGGCAATATTGACCCTTACAGTATCTTTACTTCTCTGTGCCCTGGTAATGTTAGCCAGACAAAGCAATTGCTAAGAAGAAAGCATAGATTTGGTAGACTCAATGAAGGGTATGATCCTTGCACTGAGAAGCACTCTACTGCTTACTTCAATCTACCTGAGGTCCAAAAGGCACTTCATGTTGATCAAGATCACAAGCCTAGTAAATGGGAAACCTGCAGTGAAGCTGTAAATATCAATTGGAAGGACTCTCCAAGTACGGTGCTCGATGTTTATCATGAACTTATTGGTTCAGGACTGAGGATATGGATGTTCAGTGGTGACACAGATTCAGTAATCCCGGTGACATCTACTCGGTATAGTATAGATGCTCTTAAGCTTCCGACAGTTAGCCCTTGGCGTCCATGGTATGACGAAGGGAAGGTGGGAGGGTGGACACAAGAATATGATGGACTCACCTTTGTGGCAGTAAGGGGAGCAGGACATGAAGTTCCTTTGCATAGACCAAAACTTGCTCTTTCACTCTTCAAAGCCTTCATAGCTGGAACCTCCATGCCCACTCTTCAGCTTGTCAGTGACTCCTAA	1398	0.4349	MGWSQVITLTTLVVGAMAITVTCSPFVQQKLDKVGKLPGQSFAIKFQHYSGYVTVNEEAGRALFYWFMEADQDPQTKPLLLWLNGGPGCSSIAFGEAEEIGPFHINPDGNTLYLNPYSWNQVANVLFLDSPVGVGFSYSNTSSDILNNGDKRTAEDSLTFLLKWFERFPQYKGRDFFIAGESYAGHYVPQLSQAILKYNSETKKNAINLKGYLVGNALTDDFHDHLGVAQFMWASGLISDQTYKLLNQCDSESFVHPSNSCNQAFENADVELGNIDPYSIFTSLCPGNVSQTKQLLRRKHRFGRLNEGYDPCTEKHSTAYFNLPEVQKALHVDQDHKPSKWETCSEAVNINWKDSPSTVLDVYHELIGSGLRIWMFSGDTDSVIPVTSTRYSIDALKLPTVSPWRPWYDEGKVGGWTQEYDGLTFVAVRGAGHEVPLHRPKLALSLFKAFIAGTSMPTLQLVSDS*	466

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo01g3033	465	Pfam	Serine carboxypeptidase	38	452	IPR001563	GO:0004185\|GO:0006508
	Amo01g3033	465	ProSitePatterns	Serine carboxypeptidases, histidine active site.	423	440	IPR033124	GO:0004185
	Amo01g3033	465	Gene3D	-	312	350	-	-
	Amo01g3033	465	Gene3D	-	359	453	-	-
	Amo01g3033	465	PRINTS	Carboxypeptidase C serine protease (S10) family signature	128	138	IPR001563	GO:0004185\|GO:0006508
	Amo01g3033	465	PRINTS	Carboxypeptidase C serine protease (S10) family signature	423	436	IPR001563	GO:0004185\|GO:0006508
	Amo01g3033	465	PRINTS	Carboxypeptidase C serine protease (S10) family signature	115	127	IPR001563	GO:0004185\|GO:0006508
	Amo01g3033	465	PRINTS	Carboxypeptidase C serine protease (S10) family signature	164	189	IPR001563	GO:0004185\|GO:0006508
	Amo01g3033	465	PANTHER	SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE	8	459	IPR001563	GO:0004185\|GO:0006508
	Amo01g3033	465	PANTHER	SERINE CARBOXYPEPTIDASE-LIKE 29	8	459	-	-
	Amo01g3033	465	SUPERFAMILY	alpha/beta-Hydrolases	33	456	IPR029058	-
	Amo01g3033	465	Gene3D	alpha/beta hydrolase	29	286	IPR029058	-
	Amo01g3033	465	ProSitePatterns	Serine carboxypeptidases, serine active site.	178	185	IPR018202	GO:0004185

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo01g3033	Amo-Chr1	101697909	101700374	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo01g3033	322	456	Calmodulin-binding Proteins	AT2G22960	26.471	9.40e-12	62.0

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo01g3033	K16297		-	fve:101295740	737.258