Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3020 ATGGCAGTACTACCAAGGCATAGGTGGACGGGAAGATATGAAGCTCATCTGTGGGACAAGAATTGCTGGAATGAGTCTCAGAACAAGAAGGGACGACAAGCTACACAAGAAGAAGCTGCCACTGCCTATGACATGGCTGCTATTGAATACCGTGGACTTAACGCCGTCACCAATTTCGATCTCAGCCGTTACATTAAGTGGCTTAAGCCTAACAATAACAGCAACGAAAATGATCATAATAATAATAACAACAGGATTAGTTTTAATCTTGCTGCTGCTGTTGCCGTTGATGACGTCAACCCTAATTGCAATAACACCAACTTCACACCAAACTTCAATAATAATAATAAGGAACACGAATATAGCCTCTTCAACCACGAACCATTATTCATTAATAATAATAATATTGATAATAATAATAATATTAATAATAATAATGGAAGTAAGTTGGGTCAGGCTCGACCTGGTGCCACGTCAGCCCTAGAGCTTCTGCTTCAGTCGTCCAAGTTTAAGGAAATGATGGAGATGACGTCATCAGTGGCGAATAACAATAATCCATCAACACCAGCAGAGTGTAGTGATGAGTTGCCACAGTGCAATTTCCCTGAAGACATTCAAACTTATTTTGAGTATGAAGATTCAAATAAGTATGAAGAAGGAGATCATGATACGTTGTTCAACGAGATCCACTCATTTGTGCCAATGTTCCACTGCGATGACTTCGAGAATTGA 732 0.3975 MAVLPRHRWTGRYEAHLWDKNCWNESQNKKGRQATQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKWLKPNNNSNENDHNNNNNRISFNLAAAVAVDDVNPNCNNTNFTPNFNNNNKEHEYSLFNHEPLFINNNNIDNNNNINNNNGSKLGQARPGATSALELLLQSSKFKEMMEMTSSVANNNNPSTPAECSDELPQCNFPEDIQTYFEYEDSNKYEEGDHDTLFNEIHSFVPMFHCDDFEN* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3020 243 SMART rav1_2 6 66 IPR001471 GO:0003700|GO:0006355
Amo01g3020 243 CDD AP2 6 62 IPR001471 GO:0003700|GO:0006355
Amo01g3020 243 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 5 33 - -
Amo01g3020 243 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 31 228 - -
Amo01g3020 243 PANTHER AP2 DOMAIN-CONTAINING TRANSCRIPTION FACTOR 31 228 - -
Amo01g3020 243 PANTHER AP2 DOMAIN-CONTAINING TRANSCRIPTION FACTOR 5 33 - -
Amo01g3020 243 SUPERFAMILY DNA-binding domain 6 62 IPR016177 GO:0003677
Amo01g3020 243 Gene3D AP2/ERF domain 2 62 IPR036955 GO:0003700|GO:0006355
Amo01g3020 243 ProSiteProfiles AP2/ERF domain profile. 1 60 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3020 Amo-Chr1 101607974 101610218 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3020 4 96 AP2-EREBP Transcription Factor Family AT5G65510 41.414 5.28e-19 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3020 K09285 - gmx:100804555 189.889