Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3019 ATGCCCGATTTGGGGAATTTGTCACTTTCCGAGACTCTAGCTCTCCCCACCCCCGCAGACCCTCCTGTCTTAACCAATTCTCTCCACTCAGCCAACCTCAAAAACCTACCGCCACCATCCAACACCGTCGTTTACACGCGCTATGCTCTTCGGCAAGATGGCATTCGCATCCACAAAAGTCACGGAACCGAGATTAAGGTTCCTGCCGTCAAAGCAGCTAATGGTGACGCCAAGGGTTTGGAGGATGGAATCAGAGAGTTCTCTCAGAAGAGGAACAAGACTGGCTCCGAGGATCCCGATCTTGAATTCTCACTTCCCTTCCTCGTTGGCGCTTCCAAAATGGTTGAATGCCTTGTTTGCCATCGTCTAGTGTGCCCAGGGGAGGAGCTATGTTGTTCTGTTCGTGGCTGCGGGGGAATCTACCATATCAATTGTGCAAAAGAAGCTATGGGGATCTCGAATCCAAAAAAATTCAAGTGCTCACGACATGCATGCTTTGTTTGCAAACAAAAGAAGCAGTTGCGGTGTGTGCGTTGTACAAATGCATTTCATGAAAAATGTGCCCCATGGCCAGAGGCTGTGGTGAGCCTACAGGACAATCCTGGACATGCTATTTGTTGGAGGCATCCTTCTGATTGGCGATTGGATGGAAAGCTTGAAGGTTCCACAAGTGACATACAGGAAGTATTTCGTCGGTTGCCTGTTCCATATGTCAATGAGGATTTCAAGATTGATCTTACATGGAAAGAGATGGAGACTAAGATGGAACCACCATCATATGTGCATATAAGGCGCAGTATCCTACATTTTATTTATTTTGCTGAAACAAGGTTAACTTCTGTGCTGACTGCCGATCATGATATTGCTAACCTTAATCTAATCTCAGATTCCTACTTAGTCAAGAAGCGTAGTGACGAAGATGATGGTGCAGGGTGTACCAGTTGCAGTTCTACCTGCTCGGATGATTGTGTGTGCAGAGTTCAATGCATAAGTTGCTCAAAGTCATGTCGCTGCTCAGAAAATTGCGGTAATAGGCCATTTCGCAAGGAGAAAAAGATTAAGCTGGTCAAGACTGAACATTGTGGATGGGGTGTAGAGGCAGCTGAAACCATCAACAAAGGCGAATTCATAATTGAGTATATTGGAGAAGTCATTGATGATGCTTTATGTGAAAAAAGGCTTTGGGACATGAAGTACGGGGGTGCACAGAATTTTTACATGTGTGAGATTCGTAAAGATTTTACTATAGATGCAACCTTCAAAGGAAATATGGCTCGCTTCTTAAACCATGGTTGTGATCCCAACTGTGTTCTCGAGAAGTGGCAAGTAGATGGTGAAACGCGGGTTGGTGTATTTGCTTCCCGTTCAATAGAAACGGGAGATCCCTTAACATATGATTACAGGTATTTCCTGCTTTTTCTTTCTTCATTTTCTATTTTCTACTTAGTACGTATTCTCATCTCTTTCCTGGGTAAAATGCCAATGTGGTGCCCCAAATTGTCGAGGGTTTTAGGGGTGAAAAAGAAAATTGTGAAGTTAGATATTTGTTGGGGTTGGGGATCAAAGCATAAGAGAACTTCACCTGCATGTCCTGCCATAGAAACACATGTATGA 1614 0.4436 MPDLGNLSLSETLALPTPADPPVLTNSLHSANLKNLPPPSNTVVYTRYALRQDGIRIHKSHGTEIKVPAVKAANGDAKGLEDGIREFSQKRNKTGSEDPDLEFSLPFLVGASKMVECLVCHRLVCPGEELCCSVRGCGGIYHINCAKEAMGISNPKKFKCSRHACFVCKQKKQLRCVRCTNAFHEKCAPWPEAVVSLQDNPGHAICWRHPSDWRLDGKLEGSTSDIQEVFRRLPVPYVNEDFKIDLTWKEMETKMEPPSYVHIRRSILHFIYFAETRLTSVLTADHDIANLNLISDSYLVKKRSDEDDGAGCTSCSSTCSDDCVCRVQCISCSKSCRCSENCGNRPFRKEKKIKLVKTEHCGWGVEAAETINKGEFIIEYIGEVIDDALCEKRLWDMKYGGAQNFYMCEIRKDFTIDATFKGNMARFLNHGCDPNCVLEKWQVDGETRVGVFASRSIETGDPLTYDYRYFLLFLSSFSIFYLVRILISFLGKMPMWCPKLSRVLGVKKKIVKLDICWGWGSKHKRTSPACPAIETHV* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3019 537 PANTHER SET DOMAIN PROTEINS 71 267 - -
Amo01g3019 537 SUPERFAMILY SET domain 295 470 IPR046341 -
Amo01g3019 537 Gene3D SET domain 273 480 IPR046341 -
Amo01g3019 537 PANTHER SET DOMAIN PROTEINS 297 534 - -
Amo01g3019 537 ProSiteProfiles SET domain profile. 351 468 IPR001214 GO:0005515
Amo01g3019 537 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 536 IPR025787 -
Amo01g3019 537 ProSiteProfiles AWS domain profile. 308 351 IPR006560 GO:0005634|GO:0018024
Amo01g3019 537 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHR3 71 267 - -
Amo01g3019 537 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 212 IPR013083 -
Amo01g3019 537 SMART PHD_3 116 164 IPR001965 -
Amo01g3019 537 SMART PHD_3 165 210 IPR001965 -
Amo01g3019 537 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHR3 297 534 - -
Amo01g3019 537 SMART set_7 351 474 IPR001214 GO:0005515
Amo01g3019 537 Pfam SET domain 362 467 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3019 Amo-Chr1 101591911 101596438 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3019 332 467 C2H2 Transcription Factor Family AT2G23740 36.129 6.79e-21 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Amo01g3019 SET 4.2e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3019 - - pper:18790153 565.844