Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3017 ATGCTTGTGCTTGTGAGCTATGTTGAAATCCGTTGTTGCTCTATAGTCATGGCGCTCTACTCGGTGGTTCTCCTTCTCGTCCTTTTCCTCTCGCGTGCCGCACTCTCTTCATCTGCGGAGCCTCGCAACCACGAAGTGGAGGCTCTAATGAGCATCAAGTGGAGTCTCACTGATCCTCACGGTGTGTTGAGTAACTGGGATGAGTACTCAGTCGACGCTTGCAGCTGGGCCATGATTACTTGCTCCTCTGATTCCCCTTCGCCGAGCCAATCTCTCTCTGGAACTTTGTCTGCAGCAATTGGAAACCTAACAAATCTTCGCCAAGTGTTACTGCAGAACAACAATATTTCAGGTCGAATTCCGCCGGAGCTTGGAACCCTTCCAAAGCTTCAGACATTGGATCTTTCCAATAATCGATTCTCTGGGGTGATTCCTTCCTCTCTCGGCCAATTGGATAGTCTCCAATACCTGAGGCTCAACAACAATAGCTTGTCAGGACCCTTTCCTGTTTCACTGGCCAAAATCCCACAGCTTGCTTTCTTGGACTTGTCTTATAACAATCTAAGTGGACCATTGCCCAAGTTTCCAGCAAGGGCATTCAATATTGTGGGAAACCCATTAATTTGTGGAAGCATCACTACTGAAGGTTGCTCTGGATCAGCAACTCTTATGCCCGTTTCCTTCTCTCAAACATCATCACAAGGAAAACACAAGTCCAGAAAAATAGCAGTTGCACTTGGAGTTAGTCTTAGTTGTGCTTCTCTCATGGTTTTGCTCTTTGGGCTCTTTTGGTATAGACATAAACGACAGCACCAGGCCATCCTGTTTATTGGTGAATATAAGGAAGAGGGAATTGTCAGCTTGGGAAATCTCAAGACTTTCACGTTCAGAGAGCTCCAACAGGCAACAGATAGTTTCAGCTCCAAGAACATACTTGGGGCTGGAGGTTTTGGCAACGTTTATAGGGGAAAACTTGGTGACGGCTCTATGGTGGCAGTGAAAAGACTGAAGGATGTTACTGGAAGTTCTGGTGAATCACAGTTTCGAACTGAATTGGAGATGATCAGTTTGGCAGTTCATCGCAATTTACTTCGCTTAATTGGATATTGTGCTACTCCTAATGAAAAGCTTCTGGTTTATCCTTATATGTCCAATGGCAGTGTGGCATCCAGGCTTAGAGGCAAACCATCCTTAGATTGGAACACAAGAAAGAGGATAGCAATTGGAGCTGCGAGAGGACTTCTGTATCTGCACGAGCAATGCGATCCAAAGATAATACACAGAGATGTAAAAGCTGCTAATGTTCTTCTTGATGACTACTGTGAGGCTGTTGTTGGTGATTTTGGCCTTGCAAAGCTCCTTGACCATTCTGAATCCCACGTGACAACTGCGGTCCGTGGCACTGTTGGGCACATTGCTCCAGAGTACCTTTCCACTGGCCAATCTTCTGAGAAAACTGATGTATTTGGTTTTGGCATTCTCTTGCTAGAGCTCATAACTGGAATGACAGCACTTGAGTTTGGGAAAACTGTGAATCAAAAAGGCGCTATGCTAGAGTGGGTTAGGAAAATACAGCAAGAAAAGAAGGTTTCGGTGTTGGTGGACAAGGAGCTAGGGAGCAACTATGACATGATAGAGGTGGGGGAGATGCTTCAAGTGGCTTTACTATGCACTCAATATTTGCCAGCACATCGCCCCAAGATGTCCGAGGTGGTCCGAATGCTTGAAGGCGATGGACTTGCTGAGAAGTGGGCAGCATCACATAGTAATAATCATGATCGGAATGTTAGTCATGGCATGACCCCAAGCAATAACAGTGGCCACACATCATCCCGCGCCCCTGCCCCTGCATCAAAGCATGATGACAGTGTTCATGATCGTACAAGCATGTTTGGCACCACAATGGATGACGATGATGATGAACGCTCCTTGGATTCCTATGCCATGGAACTCTCTGGTCCTAGGTAA 1968 0.4629 MLVLVSYVEIRCCSIVMALYSVVLLLVLFLSRAALSSSAEPRNHEVEALMSIKWSLTDPHGVLSNWDEYSVDACSWAMITCSSDSPSPSQSLSGTLSAAIGNLTNLRQVLLQNNNISGRIPPELGTLPKLQTLDLSNNRFSGVIPSSLGQLDSLQYLRLNNNSLSGPFPVSLAKIPQLAFLDLSYNNLSGPLPKFPARAFNIVGNPLICGSITTEGCSGSATLMPVSFSQTSSQGKHKSRKIAVALGVSLSCASLMVLLFGLFWYRHKRQHQAILFIGEYKEEGIVSLGNLKTFTFRELQQATDSFSSKNILGAGGFGNVYRGKLGDGSMVAVKRLKDVTGSSGESQFRTELEMISLAVHRNLLRLIGYCATPNEKLLVYPYMSNGSVASRLRGKPSLDWNTRKRIAIGAARGLLYLHEQCDPKIIHRDVKAANVLLDDYCEAVVGDFGLAKLLDHSESHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGMTALEFGKTVNQKGAMLEWVRKIQQEKKVSVLVDKELGSNYDMIEVGEMLQVALLCTQYLPAHRPKMSEVVRMLEGDGLAEKWAASHSNNHDRNVSHGMTPSNNSGHTSSRAPAPASKHDDSVHDRTSMFGTTMDDDDDERSLDSYAMELSGPR* 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3017 655 Pfam Leucine rich repeat 128 188 IPR001611 GO:0005515
Amo01g3017 655 ProSiteProfiles Protein kinase domain profile. 306 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g3017 655 PRINTS Leucine-rich repeat signature 130 143 - -
Amo01g3017 655 PRINTS Leucine-rich repeat signature 175 188 - -
Amo01g3017 655 MobiDBLite consensus disorder prediction 590 613 - -
Amo01g3017 655 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 22 655 - -
Amo01g3017 655 Pfam Protein kinase domain 307 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g3017 655 SMART serkin_6 306 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g3017 655 MobiDBLite consensus disorder prediction 618 637 - -
Amo01g3017 655 MobiDBLite consensus disorder prediction 589 655 - -
Amo01g3017 655 Gene3D Transferase(Phosphotransferase) domain 1 383 594 - -
Amo01g3017 655 Gene3D Phosphorylase Kinase; domain 1 277 382 - -
Amo01g3017 655 ProSitePatterns Protein kinases ATP-binding region signature. 312 334 IPR017441 GO:0005524
Amo01g3017 655 SUPERFAMILY L domain-like 42 202 - -
Amo01g3017 655 SMART LRR_typ_2 127 150 IPR003591 -
Amo01g3017 655 SMART LRR_typ_2 103 125 IPR003591 -
Amo01g3017 655 SMART LRR_typ_2 151 182 IPR003591 -
Amo01g3017 655 SUPERFAMILY Protein kinase-like (PK-like) 288 576 IPR011009 -
Amo01g3017 655 Gene3D Ribonuclease Inhibitor 42 219 IPR032675 -
Amo01g3017 655 Pfam Leucine rich repeat N-terminal domain 43 82 IPR013210 -
Amo01g3017 655 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 22 655 - -
Amo01g3017 655 ProSitePatterns Serine/Threonine protein kinases active-site signature. 425 437 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3017 Amo-Chr1 101557085 101561037 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3017 15 655 Receptor kinase-like Gene Family AT5G16000 62.195 0.0 774
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Amo01g3017 Pkinase 1.8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3017 - - gmx:100797186 1033.48