Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3012 ATGGAAAGCAATAATCTTGATGGAGAAATTCCAACATCACTTTTCTGCAATGGAAGTTCACTAAGTTATATAGACCTCTCCAATAATTCCTTAGGGGGATTTATCCCTTTGAGCAATGAGTGTGTCCTTAAAGAACTTAGGTTCTTCTTACTTTGGTCTAATCATTTTGTTGGTCATGTTCCCTCATCTCTTTCAAACTCCACTCAACTTAAATGGCTTGATTTGGAGTCAAATATGTTAAGTGGAGAGCTTCCATCTGAGATAGTACACAATTGGCCACAATTACAGTTCCTGTACTTGTCATATAATGACTTTGTCAGCCATGATGGTAACGCCAACCTTGAACCTTTCTTTGCTTCCTTGATGAACTTGTCTAGATTTCAAGAACTCGAATTAGCGGGGAACCGCCTTGGTGGGAAGCTACCTCATATTATTGGTGATCTTCCTACTAGTATGCGGCATCTTCACCTAGAAGGAAATCTCATATATGGTTCTATACCTCCACATATTTCCAACCTTGTCAACTTGACTTTCTTGAATTTGTCTAGTAATCAAATAAATGGATCAATCCCCTCTAGTTTCTGCCACATGATTAGGCTAGAGAGAATTTATTTGTCAAATAACTCATTACATGGTGAGATTCCATCAGAACTTAGTGATATCAAACACCTGGGCCTTCTAGATTTGTCAAGAAACAAGCTTTCAGGTTCAATACCAGATAGTTTTGCCAACCTTCCCCAGTTAAGAAGGCTTTTACTTTATGACAACCAGCTTTCCGGGAAAATTCCACCAAGTCTTGGAAAATGTGTCAATTTGGAGATTCTGGACTTGTCTCACAACAAGATTTCAGGCCAGATTCCTGCAGAAGTTGCAGCTTTGGCTAGCTTGAAACTATACTTGAATTTATCAAGCAATAACTTATATGGTCCAATTCCATTAGAACTCAGCAAAATGGATATGGTGCTAGCTATTGATCTTTCCATGAACAATCTATCAGGAAGAATCCCACCACAACTTGAAAGTTCCATAGCACTAGAGTACCTCAACCTCTCTGGTAACTCCTTAGAAGGCTCTATCCCTTATTCATTAGGCCAATTGCCTTATCTTGAAGCACTTGATGTGTCTTCAAACCAGTTGAATGGAGTAATACCAGTGTCTCTGCAGCTATCTTCCACCCTCAAAGTACTCAATTTCTCTTTCAACAAATTCTCAGGAAATGTCTCAAACAAGGGAGCATTTTCATCTCTGACCATAGATTCTTTCCTGGGAAATGATGGTCTTTGTGGCACAGTAATAGGCATGGAAAGCTGCCATAAGAAACACAGCTATCATTTGGTGTTCTTATTGATTCCTGTGTTACTATTTGCCACTCCTCTTCTGTGCATGTGTAGGTACTCCATGGTAATCAAGTCAAGAGTGAGAAAGCGATTCGCAGTTGTTAACAAGGGCAAGTTGAGGGATGAGGAAGAGGAAACAGAAGAGCTCCATTATCCAAAAATTTCATATGGAAATCTTAGAGAAGCCACAGGAGGTTTCAGTTCCTCGAGCTTAATCGGTTCAGGCCGGTTTGGACAGGTCTACAAAGGAGTCCTCTTAGATAACACAAGAGTAGCAGTGAAGGTATTAGATACAGAAACAGCTGGCGATATCTCATGGAGCTTTAAGAGGGAATGCCAAATCATTAGAAAGATTAGGCACAGAAACTTAATAAAGATCATCACAATTTGTAGTAAACCAGGATTTAAGGCTCTTGTGCTTCCTCTTATGCCAAATGGTAGTCTTGAGAGGCACTTATATCCAAGTCATGGGTTAAACCAAAGGTTGGATGTGGTTCAGTTAGTGAGGATATGCAGCGATGTAGCCGAGGGAATGTCCTATCTCCACCATTACTCACCAGTGAAAATCGCGCACTGCGATCTTAAGCCAAGTAATATACTTCTTGATGAAGATATGACAGCTTTGGTTACGGATTTTGGAATTGCAAAGCTTGTAAAAGGTGATGACAGTGCCTCCACAAGTTACTCAGCAGCATCTTTCAGCTCAACACAGGGCTTATTATGTGGCTCTGTTGGCTATATAGCTCCTGAATATGGCATGGGAAAACATGCTTCAACTCAAGGTGATGTTTATAGTTTTGGAGTGATTCTGTTAGAAATCGTCACGGGGAGACGCCCCACGGATGTACTCATGCATGAAGGATCAAGCTTGCATGAGTGGGTTAAGAGACAATACACAAACCAAGACAAGCTTGGAAAATTGGTTGAAGAAGCATTGCAAAGATACTCTTCTTGTTTGCCAAATCATCATAACAGAACAAGGCAAGATGTTATACTTGAACTTGTGGAGTTGGGACTTATCTGCACACAGCAGAATCCTTCAACAAGACCAACCATGATGGATGTAGCACAAGAGTTGGGAAGATTAAAGGACTACCTCACTAATCCAAATTCTTCATGCAGATCAGAAAATTCAGTCAAATAG 2481 0.4035 MESNNLDGEIPTSLFCNGSSLSYIDLSNNSLGGFIPLSNECVLKELRFFLLWSNHFVGHVPSSLSNSTQLKWLDLESNMLSGELPSEIVHNWPQLQFLYLSYNDFVSHDGNANLEPFFASLMNLSRFQELELAGNRLGGKLPHIIGDLPTSMRHLHLEGNLIYGSIPPHISNLVNLTFLNLSSNQINGSIPSSFCHMIRLERIYLSNNSLHGEIPSELSDIKHLGLLDLSRNKLSGSIPDSFANLPQLRRLLLYDNQLSGKIPPSLGKCVNLEILDLSHNKISGQIPAEVAALASLKLYLNLSSNNLYGPIPLELSKMDMVLAIDLSMNNLSGRIPPQLESSIALEYLNLSGNSLEGSIPYSLGQLPYLEALDVSSNQLNGVIPVSLQLSSTLKVLNFSFNKFSGNVSNKGAFSSLTIDSFLGNDGLCGTVIGMESCHKKHSYHLVFLLIPVLLFATPLLCMCRYSMVIKSRVRKRFAVVNKGKLRDEEEETEELHYPKISYGNLREATGGFSSSSLIGSGRFGQVYKGVLLDNTRVAVKVLDTETAGDISWSFKRECQIIRKIRHRNLIKIITICSKPGFKALVLPLMPNGSLERHLYPSHGLNQRLDVVQLVRICSDVAEGMSYLHHYSPVKIAHCDLKPSNILLDEDMTALVTDFGIAKLVKGDDSASTSYSAASFSSTQGLLCGSVGYIAPEYGMGKHASTQGDVYSFGVILLEIVTGRRPTDVLMHEGSSLHEWVKRQYTNQDKLGKLVEEALQRYSSCLPNHHNRTRQDVILELVELGLICTQQNPSTRPTMMDVAQELGRLKDYLTNPNSSCRSENSVK* 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3012 826 SUPERFAMILY Protein kinase-like (PK-like) 492 805 IPR011009 -
Amo01g3012 826 SUPERFAMILY L domain-like 175 429 - -
Amo01g3012 826 Pfam Leucine rich repeat 199 258 IPR001611 GO:0005515
Amo01g3012 826 SMART LRR_typ_2 221 244 IPR003591 -
Amo01g3012 826 SMART LRR_typ_2 270 293 IPR003591 -
Amo01g3012 826 SMART LRR_typ_2 197 220 IPR003591 -
Amo01g3012 826 SMART LRR_typ_2 245 269 IPR003591 -
Amo01g3012 826 SMART LRR_typ_2 173 196 IPR003591 -
Amo01g3012 826 SMART LRR_typ_2 366 389 IPR003591 -
Amo01g3012 826 ProSiteProfiles Leucine-rich repeat profile. 271 293 IPR001611 GO:0005515
Amo01g3012 826 ProSiteProfiles Leucine-rich repeat profile. 175 197 IPR001611 GO:0005515
Amo01g3012 826 ProSiteProfiles Protein kinase domain profile. 512 812 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g3012 826 ProSitePatterns Protein kinases ATP-binding region signature. 518 540 IPR017441 GO:0005524
Amo01g3012 826 PRINTS Leucine-rich repeat signature 272 285 - -
Amo01g3012 826 PRINTS Leucine-rich repeat signature 366 379 - -
Amo01g3012 826 Pfam Leucine Rich Repeat 175 197 IPR001611 GO:0005515
Amo01g3012 826 Pfam Leucine Rich Repeat 345 364 IPR001611 GO:0005515
Amo01g3012 826 Gene3D Ribonuclease Inhibitor 1 107 IPR032675 -
Amo01g3012 826 Gene3D Ribonuclease Inhibitor 108 445 IPR032675 -
Amo01g3012 826 PANTHER LEUCINE-RICH RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN 2 809 - -
Amo01g3012 826 Gene3D Phosphorylase Kinase; domain 1 473 587 - -
Amo01g3012 826 ProSitePatterns Serine/Threonine protein kinases active-site signature. 635 647 IPR008271 GO:0004672|GO:0006468
Amo01g3012 826 Pfam Leucine Rich repeat 269 284 IPR001611 GO:0005515
Amo01g3012 826 SUPERFAMILY L domain-like 3 224 - -
Amo01g3012 826 CDD STKc_IRAK 518 808 - -
Amo01g3012 826 SMART serkin_6 512 812 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g3012 826 Gene3D Transferase(Phosphotransferase) domain 1 589 823 - -
Amo01g3012 826 Pfam Protein kinase domain 514 803 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo01g3012 826 PANTHER OS04G0122200 PROTEIN 2 809 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3012 Amo-Chr1 101514594 101518098 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g3012 3 810 Receptor kinase-like Gene Family AT3G47570 35.947 6.52e-136 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Amo01g3012 Pkinase 2.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3012 - - lang:109346572 1256.51