Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2999 ATGGGAAAGGCATCACAAGTTAACAAGAATAATAATCATAATCTTAGTGTAATCAATGGCAGTACTACCAAGGTGAAACGTACGAGGAGGAGTGTCCCTAGAGACTCTCCACCTCAAAGAAGCTCGATTTACAGAGGAGTCACTCGGCATAGGTGGACGGGAAGATATGAAGCTCATCTGTGGGACAAGAATTGCTGGAATGAGTCTCAGAACAAGAAGGGACGACAAGTCTACCTTGGTACGTATATGATATACATTATGTTAAGTATGTTGATTAAGCTACACAAGAAGAAGCTGCCACTGCCTATGACATGGCTGCTATTGAATACCGTGGACTTAACGCCGTCACCAATTTCGATCTCAGCCGCTCGACCTGGTGCCACGTCAGCCCTAGAGCTTCTGCTTCAGTCGTCCAAGTTTAAGGAAATGATGGAGATGACGTCATCAGTGGCGAATAACAATAATCCATCAACACCAGCAGAGTGTAGTGATGAGTTGCCACAGTGCAATTTCCCTGACGACATTCAAACTTATTTTGAGTATGAAGATTCAAATAAGTATGAAGAAGGAGATCATGATACGTTGTTCAACGAGATCCACTCATTTGTGCCAATGTTCCACTGCGATGACTTCGAGAATTGA 642 0.4346 MGKASQVNKNNNHNLSVINGSTTKVKRTRRSVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNESQNKKGRQVYLGTYMIYIMLSMLIKLHKKKLPLPMTWLLLNTVDLTPSPISISAARPGATSALELLLQSSKFKEMMEMTSSVANNNNPSTPAECSDELPQCNFPDDIQTYFEYEDSNKYEEGDHDTLFNEIHSFVPMFHCDDFEN* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2999 213 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 9 82 - -
Amo01g2999 213 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 129 199 - -
Amo01g2999 213 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR-RELATED 129 199 - -
Amo01g2999 213 Gene3D AP2/ERF domain 43 84 IPR036955 GO:0003700|GO:0006355
Amo01g2999 213 SMART rav1_2 43 110 IPR001471 GO:0003700|GO:0006355
Amo01g2999 213 MobiDBLite consensus disorder prediction 1 26 - -
Amo01g2999 213 Pfam AP2 domain 43 82 IPR001471 GO:0003700|GO:0006355
Amo01g2999 213 ProSiteProfiles AP2/ERF domain profile. 43 82 IPR001471 GO:0003700|GO:0006355
Amo01g2999 213 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR-RELATED 9 82 - -
Amo01g2999 213 MobiDBLite consensus disorder prediction 1 43 - -
Amo01g2999 213 SUPERFAMILY DNA-binding domain 42 82 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2999 Amo-Chr1 101435226 101437434 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2999 20 82 AP2-EREBP Transcription Factor Family AT2G41710 65.079 5.17e-22 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo01g2999 AP2 2.3e-06 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2999 K09285 - qsu:112006985 145.206