Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2998 ATGCCCGATTTGGGGAATTTGTCTCTTTCCGAGACTCTAGCTCTCCCCACCCCCGCAGACCCTCCTGTCTTAACCAATTCTCTCCACTCAGCCAACCTCAAAAACCTATCGCCACCATCCAACACCGTTGTTTACACGCGCTATGCTCTTCGGCAAGATGGCATTCGCATCCACAAAACTCACGGAACCGAGATTAAGGTTCCTGCCGTCAAAGCAGCTAATGGTGACGCCAAGGGTTTGGAGGATGGAATCAGAGAGTTCTCTCAGAAGAGGAACAAGATTGGCTCCGAGGATCCCGATCTTGAATTCTCACTTCCCTTCCTCGTTGGCGCTTCCAAAATGGTTGAATGCCTTGTTTGCCATCGTCTAGTGTGCCCAGGGGAGGAGCTATGTTGTTCTGTTCGTGGCTGTGGGGGAATCTACCATATCAATTGTGCAAAAGAAACTATGGGGATCTCGAATCCAAAAAAATTCAAGTGCTCACGACATGCATGCTTTGTCTGCAAACAAAAGAAGCAGTTGCGGTGTGTGCGTTGTACAAACGCATTTCATGAAAAATGTGCCCCATGGCCAGAGGCTGTGGTGAGCCTACAGGACAATCCTGGACATGCTATTTGTTGGAGGCATCCTTCTGATTGGCGATTGGATGGGAAGCTTGAAGGTTCCACAAGTGACATACAGGAAGTATTTCGTCGGTTGCCTGTTCCATATGTCAATGAGGATTTCAAGATTGATCTTACATGGAAAGAGATGGAGACTAAGATGGAACCACCATCATATGTGCATATAAGGCGCAATTCCTACTTAGTCAAGAAGCGTAGTGACGAAGATGATGGTGCGGGGTGTACCAGTTGCAGCTCTACCTGTTCGGATGATTGTGTGTGCAGGGTTCAATGCATAAGTTGCTCAAAGTCATGTCGCTGCTCAGAAAATTGCGGTAATAGGCCATTTCGCAAGGAGAAAAAGATTAAGCTGGTCAAGACTGAACATTGTGGATGGGGTGTAGAGGCAGCTGAAACCATCAACAAAGGCGAATTCATAATTGAGTATATTGGAGAAGTCATTGATGATGCTTTATGTGAAAAAAGGCTTTGGGACATGAAATACGGGGGTGCACAGAATTTTTACATGTGTGAGATTCGTAAAGATTTTACTATAGATGCAACCTTCAAAGGAAATATGGCTCGCTTCTTAAACCATGGTTGTGATCCCAACTGTGTTCTCGAGAAGTGGCAAGTAGATGGTGAAACGCGGGTTGGTGTATTTGCTTCCCGTTCAATAGAAACGGGAGATCCCTTAACATATGATTACAGATTTGTGCAATTTGGACCTGAGGTAAAATGCCAATGTGGTGCCCCAAATTGTCGAGGGTTTTTAGGGGTGAAAAAGAAAATTGTGAAGTTAGATATTTGTTGGGGTTGGGGATCAAAGCGTAAGAGAACTTCAGCTGCATGTCCTGCCATAGAAACACATGTATGA 1479 0.4544 MPDLGNLSLSETLALPTPADPPVLTNSLHSANLKNLSPPSNTVVYTRYALRQDGIRIHKTHGTEIKVPAVKAANGDAKGLEDGIREFSQKRNKIGSEDPDLEFSLPFLVGASKMVECLVCHRLVCPGEELCCSVRGCGGIYHINCAKETMGISNPKKFKCSRHACFVCKQKKQLRCVRCTNAFHEKCAPWPEAVVSLQDNPGHAICWRHPSDWRLDGKLEGSTSDIQEVFRRLPVPYVNEDFKIDLTWKEMETKMEPPSYVHIRRNSYLVKKRSDEDDGAGCTSCSSTCSDDCVCRVQCISCSKSCRCSENCGNRPFRKEKKIKLVKTEHCGWGVEAAETINKGEFIIEYIGEVIDDALCEKRLWDMKYGGAQNFYMCEIRKDFTIDATFKGNMARFLNHGCDPNCVLEKWQVDGETRVGVFASRSIETGDPLTYDYRFVQFGPEVKCQCGAPNCRGFLGVKKKIVKLDICWGWGSKRKRTSAACPAIETHV* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2998 492 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 212 IPR013083 -
Amo01g2998 492 SMART PHD_3 116 164 IPR001965 -
Amo01g2998 492 SMART PHD_3 165 210 IPR001965 -
Amo01g2998 492 ProSiteProfiles Post-SET domain profile. 444 460 IPR003616 -
Amo01g2998 492 Gene3D SET domain 237 469 IPR046341 -
Amo01g2998 492 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHR3 71 489 - -
Amo01g2998 492 SMART set_7 321 444 IPR001214 GO:0005515
Amo01g2998 492 ProSiteProfiles SET domain profile. 321 438 IPR001214 GO:0005515
Amo01g2998 492 SUPERFAMILY SET domain 241 450 IPR046341 -
Amo01g2998 492 ProSiteProfiles AWS domain profile. 278 321 IPR006560 GO:0005634|GO:0018024
Amo01g2998 492 PANTHER SET DOMAIN PROTEINS 71 489 - -
Amo01g2998 492 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 491 IPR025787 -
Amo01g2998 492 SMART PostSET_3 444 460 IPR003616 -
Amo01g2998 492 CDD SET_ASHR3-like 322 460 - -
Amo01g2998 492 Pfam SET domain 332 437 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2998 Amo-Chr1 101392888 101397575 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2998 302 459 C2H2 Transcription Factor Family AT2G23740 37.017 7.99e-24 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Amo01g2998 SET 3.7e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2998 - - pper:18790153 647.891