Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2979 ATGCCTCCTCAGCGTGATTCCCTACCCAAACCCAACCCTAATATCTTATCCTTCTTCCTCAAACCAATCATCATGCTTCTCCTTACCGCCCTCTTCTTCCTCTTCATTGGCTTCGCCGCTTTCATCCTCCTTCACCTCTTCGTCATCGGCGGCGCCCTCCACCGCCTCCGCTCCCGCCCCGACTCCTCCTCCTCCCTCCACCCTTCCCCTTCCGACGTCCTATCCCCGCGCCACCTCAGCAAGCTCCCCCACTTCCGCGTCTCCAGAGGATCCCCATACCCCACCCCCGATTCCCGCTGCGTCGTCTGCCTCGACGGCTTCCGCAACGGCCAGTGGTGCAGGAACCTCGCCGGTTGCGGCCACGTCTTTCATCGGAGGTGCGTCGACACGTGGCTCGTCAAGGTCGCCGCTTGCCCCACATGCCGGACACCTGTTCGATTAAATGCCGCTGTAAAAAGAGACGATCACGCTCGCCAATTATGGACCTGTGCTACAGCTGACTCCAACGCTCTTCCCACTTCATAG 525 0.6 MPPQRDSLPKPNPNILSFFLKPIIMLLLTALFFLFIGFAAFILLHLFVIGGALHRLRSRPDSSSSLHPSPSDVLSPRHLSKLPHFRVSRGSPYPTPDSRCVVCLDGFRNGQWCRNLAGCGHVFHRRCVDTWLVKVAACPTCRTPVRLNAAVKRDDHARQLWTCATADSNALPTS* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2979 174 SUPERFAMILY RING/U-box 96 148 - -
Amo01g2979 174 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 147 IPR013083 -
Amo01g2979 174 PANTHER RING-H2 FINGER PROTEIN ATL56 4 164 - -
Amo01g2979 174 ProSiteProfiles Zinc finger RING-type profile. 100 142 IPR001841 -
Amo01g2979 174 Pfam Ring finger domain 99 142 IPR001841 -
Amo01g2979 174 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 4 164 - -
Amo01g2979 174 SMART ring_2 100 141 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2979 10 163 C3H Transcription Factor Family AT2G18670 46.104 9.36e-38 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2979 - - gmx:102664895 189.504