Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g2978 ATGGCTAAAGGAGACAGCTTTCTGTCTCCATCACAAGAACCATCTTTTTTTCTTCCTCACCCAAACCCACCACCACCACCACCTTCCCTTCGAACTCCCTCTGTTATTCGATCTGACAGTTTCAGCTTCAACGATAAGGCCTTGAAGGTTAGTCCAAGCATACTCCTCATCATCATCATCCTCGCCATTGTTTTCTTCGTTTCTGGTTTGCTTCACCTACTTGTTAGGTTCCTATGGAGGCCTCAGAGTAGAGACCCTGATGATTTTGACAATGGCACTGCTCTTCAAGGCCAATTGCAGCAACTCTTCCATCTCCATGATGCTGGTGTTGATCAGTCCTTCATAGACACGCTCCCTGTGTTCCACTACAAAGCCATCATAGGCTTGAAGAACCCTTTTGACTGTGCCGTTTGTTTGTGTGAGTTTGAACCGGAGGACAAGCTTAGATTGTTGCCCAAATGTAGCCATGCTTTTCACATGGAGTGCATTGACACATGGCTTTTGTCTCATTCTACTTGTCCTCTCTGTAGAGCTAGCTTGCTCCCTGATTTCTCTGCTAACAACACCAGCAACACGTGTTCCCCCATTGTTCTTGTCCTCGAATCTGGGAGTGAGAGTTCTAGGGAGATTATTGCTCCCGAAAGAGATAGTACTGCTGCTGCAGCTGTTGCAAGAACAAGCTCTGTCATAACATCGAATTCCTGTGAATTTGGATCATCAACAAGGATTGATTTTCAAAACAAATCAGGTGAGTTGACTTCTTCGGGTGACAGCAACAAAGTTCTTAATATTGATGCAAATGGTGTGGAGAAAGTGGTGACTGTGAAGCTGGGCAAGTTTAGGAATGTTGATGGTGGTGGTGGAGAAGGAAGCAGTAGCAGCAACAACAATGTGGATGGAAGGAGGTGCTTCTCAATGGGGTCATTTGCTTATGTTATGGATGAGAGTTCTTCACTACAGGTACCAATAAGAACCCCAATGAAGAAGAAACAGTCAAATAGTAAAAAGAAGAGTTCTTTGCCTTTGACACCAGGGCACAGGCCAGCAATGTCAGAATATGACTCTGAGTCCAGAAGGGATTTCAGATTTGCATGCTTTGATGCCTCTAAAATTGAGGATTTTGGTGGTGCTGAAAGTAGTAACACTAATTGTAATGGGGCTGCAATTGGAAGGAGCAGAATAGAGAGCTTCTCTATATCAAAGATTTGGCTGAGAGGGAAGAAGGAGGAGAAGCAAAATGCAGCTGGAGATTCGTCCAGAAGAGCTGTTTCATTCCGGTTTCCTACGCCACAGAAGAACGCTGTTGGTTCTTCAGAAGAGATGAAGGCTAATAAGAATGTGAAATTTGATACAAGTAGTACTATTTCAGAGATGGATATTGCTAAATGGGAGAATGGAGGAAGTGAATATGGGTTTGATGAAGAAAGCCAAAGCTGCAATAGTATTGATTCTCAAGCTAGAGCTCCTTCATTTGCTAGAAGGACTTTGCTTTGGCTCACTGGAAGACAGAACAAGGTTGTTCACTCTTCTTCTGATTCCAGCATCTAG 1548 0.4386 MAKGDSFLSPSQEPSFFLPHPNPPPPPPSLRTPSVIRSDSFSFNDKALKVSPSILLIIIILAIVFFVSGLLHLLVRFLWRPQSRDPDDFDNGTALQGQLQQLFHLHDAGVDQSFIDTLPVFHYKAIIGLKNPFDCAVCLCEFEPEDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRASLLPDFSANNTSNTCSPIVLVLESGSESSREIIAPERDSTAAAAVARTSSVITSNSCEFGSSTRIDFQNKSGELTSSGDSNKVLNIDANGVEKVVTVKLGKFRNVDGGGGEGSSSSNNNVDGRRCFSMGSFAYVMDESSSLQVPIRTPMKKKQSNSKKKSSLPLTPGHRPAMSEYDSESRRDFRFACFDASKIEDFGGAESSNTNCNGAAIGRSRIESFSISKIWLRGKKEEKQNAAGDSSRRAVSFRFPTPQKNAVGSSEEMKANKNVKFDTSSTISEMDIAKWENGGSEYGFDEESQSCNSIDSQARAPSFARRTLLWLTGRQNKVVHSSSDSSI* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g2978 515 MobiDBLite consensus disorder prediction 16 31 - -
Amo01g2978 515 ProSiteProfiles Zinc finger RING-type profile. 135 177 IPR001841 -
Amo01g2978 515 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 182 IPR013083 -
Amo01g2978 515 MobiDBLite consensus disorder prediction 1 31 - -
Amo01g2978 515 CDD RING-H2_PA-TM-RING 134 177 - -
Amo01g2978 515 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 8 423 - -
Amo01g2978 515 SMART ring_2 135 176 IPR001841 -
Amo01g2978 515 Pfam Ring finger domain 134 177 IPR001841 -
Amo01g2978 515 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 8 423 - -
Amo01g2978 515 SUPERFAMILY RING/U-box 114 186 - -
Amo01g2978 515 MobiDBLite consensus disorder prediction 321 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g2978 Amo-Chr1 101103881 101105428 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo01g2978 69 511 C3H Transcription Factor Family AT2G18650 44.565 4.74e-99 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g2978 - - gmx:100797283 628.632